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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTGAGTATGTTCCTGAAACAGTTAATCGTGTGATCAAACATTACAACAAGTTGAACCAACGGATGCCTCTGATATATGTAAAACTCTATACATACCAGgtatgcttaatcatgtcagtttggttttgtcatgacccttttgtcagttttattttggaaaatagccgtgttaatgttttggattattttctagccctct...

Basic information

species Glycine max
transcript GLYMA03G38850.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G38850.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv14s0060g00600.t01 (Vitis vinifera), 5'ss of exon 5
ACTTGAGTATGTTCCTGAAACAGTTAATCGTGTGATCAAACATTACAACAAGTTGAACCAACGGATGCCTCTGATATATGTAAAACTCTATACATACCAGgtatgct--taatcatgtcagtttggttttgtcatgacccttttgtcagttttattttggaaaatagccgtgttaatgt----tttggattattttctagccctct--------------------------------------
||||||||||||||||||||| ||| |||| || || ||||| ||||| |||||||||||| ||||||| ||||||||||| || ||||||||||||||||| || |  |||| || | | |||  |||  | |||  | | || |  ||| | |||| | |||   |  | |   |||    |||  ||   ||| || |||                                         
ACTTGAGTATGTTCCTGAAACTGTTCATCGGGTTATTAAACACTACAATAAGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAGgtgtggtgttaattatttaaatttattttcattatggtc-tcttctatgttgtgtttttgcaaaagtctatatggttgtaaagtttaaatctctttttatcccagcggctgctgaaattgtaatatattgtttttatttgatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17519874|gb|BM188916.1|BM188916
EST:     AGTTGAACCAACGGATGCCTCTGATATATGTAAAACTCTATACATACCAG                         ATCTTTAGGGCACTATCTTATATTCATCGTTGCATTGGAGTCTGCCATCGG
genomic: AGTTGAACCAACGGATGCCTCTGATATATGTAAAACTCTATACATACCAGgtatgcttaa ... tatactgcagATCTTTAGGGCACTATCTTATATTCATCGTTGCATTGGAGTCTGCCATCGG
EST: gi|10843182|gb|BF066495.1|BF066495
EST:     AGTTGAACCAACGGATGCCTCTGATATATGTAAAACTCTATACATACCAG                         ATCTTTAGGGCACTATCTTATATTCATCGTTGCATTGGAGTCTGCCATCGG
genomic: AGTTGAACCAACGGATGCCTCTGATATATGTAAAACTCTATACATACCAGgtatgcttaa ... tatactgcagATCTTTAGGGCACTATCTTATATTCATCGTTGCATTGGAGTCTGCCATCGG
EST: gi|192296806|gb|FG993104.1|FG993104
EST:     AGTTGAACCAACGGATGCCTCTGATATATGTAAAACTCTATACATACCAG                         ATCTTTAGG-CACTATCTTATATTCATCGTTGCATTGGAGTCTGCCA
genomic: AGTTGAACCAACGGATGCCTCTGATATATGTAAAACTCTATACATACCAGgtatgcttaa ... tatactgcagATCTTTAGGGCACTATCTTATATTCATCGTTGCATTGGAGTCTGCCA
EST: gi|298174237|gb|HO017573.1|HO017573
EST:     AGTTGAACCAACGGATGCCTCTGATATATGTAAAACTCTATACATACCAG                         ATCTTTAGGGCACTATCTTATATTCATCGTTGC
genomic: AGTTGAACCAACGGATGCCTCTGATATATGTAAAACTCTATACATACCAGgtatgcttaa ... tatactgcagATCTTTAGGGCACTATCTTATATTCATCGTTGC
EST: gi|151410500|gb|EV280315.1|EV280315
EST:     AGTTGAACCAACGGATGCCTCTGATATATGTAAAACTCTATACATACCAG                         ATCTTTAGGGCACTATCTTATATTCATCGTTGCATTGGAGTCTGCCATCGG
genomic: AGTTGAACCAACGGATGCCTCTGATATATGTAAAACTCTATACATACCAGgtatgcttaa ... tatactgcagATCTTTAGGGCACTATCTTATATTCATCGTTGCATTGGAGTCTGCCATCGG