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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTACACTAGTCTTACTTGTAAGACATCTTTTCCCAGTGCTTACAAATGGAACGGAAGATTACCCATTTACACTACTTACTgtaagtacttgtttcaccgtttttaataaatacatctacaatctttgcccacggacagctaaattaatgaaacttctcatactatttttatgccag

Basic information

species Glycine max
transcript GLYMA03G37740.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192306386|gb|FG996146.1|FG996146
EST:     TCCCAGTGCTTACAAATGGAACGGAAGATTACCCATTTACACTACTTACT                         GTAATTATACTAAAGGCTAGCGGAATTATTATACCAATGTACATAATTATT
genomic: TCCCAGTGCTTACAAATGGAACGGAAGATTACCCATTTACACTACTTACTgtaagtactt ... tttatgccagGTAATTATACTAAAGGCTAGCGGAATTATTATACCAATGTACATAATTATT
EST: gi|214009685|gb|DB987941.1|DB987941
EST:     TCCCAGTGCTTACAAATGGAACGGAAGATTACCCATTTACACTACTTACT                         GTAATTATACTAAAGGCTAGCGGAATTATTATACCAATGTACATAATTATT
genomic: TCCCAGTGCTTACAAATGGAACGGAAGATTACCCATTTACACTACTTACTgtaagtactt ... tttatgccagGTAATTATACTAAAGGCTAGCGGAATTATTATACCAATGTACATAATTATT
EST: gi|192318633|gb|FK008293.1|FK008293
EST:     TCCCAGTGCTTACAAATGGAACGGAAGATTACCCATTTACACTACTTACT                         GTAATTATACTAAAGGCTAGCGGAATTATTATACCAATGTACATAATTATT
genomic: TCCCAGTGCTTACAAATGGAACGGAAGATTACCCATTTACACTACTTACTgtaagtactt ... tttatgccagGTAATTATACTAAAGGCTAGCGGAATTATTATACCAATGTACATAATTATT
EST: gi|298170651|gb|HO019275.1|HO019275
EST:     TCCCAGTGCTTACAAATGGAACGGAAGATTACCCATTTACACTACTTACT                         GTAATTATACT
genomic: TCCCAGTGCTTACAAATGGAACGGAAGATTACCCATTTACACTACTTACTgtaagtactt ... tttatgccagGTAATTATACT
EST: gi|151396764|gb|EV266637.1|EV266637
EST:     TCCCAGTGCTTACAAATGGAACGGAAGATTACCCATTTACACTACTTACT                         GTAATTATACTAAAGGCTAGCGGAATTATTATACCAATGTACATAATTATT
genomic: TCCCAGTGCTTACAAATGGAACGGAAGATTACCCATTTACACTACTTACTgtaagtactt ... tttatgccagGTAATTATACTAAAGGCTAGCGGAATTATTATACCAATGTACATAATTATT
EST: gi|192318632|gb|FK008292.1|FK008292
EST:     TCCCAGTGCTTACAAATGGAACGGAAGATTACCCATTTACACTACTTACT                         GTAATTATACTAAAGGCTAGCGGAATTATTATACCAATGTACATAATTATT
genomic: TCCCAGTGCTTACAAATGGAACGGAAGATTACCCATTTACACTACTTACTgtaagtactt ... tttatgccagGTAATTATACTAAAGGCTAGCGGAATTATTATACCAATGTACATAATTATT
EST: gi|192319126|gb|FK009094.1|FK009094
EST:     TCCCAGTGCTTACAAATGGAACGGAAGATTACCCATTTACACTACTTACT                         GTAATTATACTAAAGGCTAGCGGAATTATTATACCAATGTACATAATTATT
genomic: TCCCAGTGCTTACAAATGGAACGGAAGATTACCCATTTACACTACTTACTgtaagtactt ... tttatgccagGTAATTATACTAAAGGCTAGCGGAATTATTATACCAATGTACATAATTATT
EST: gi|192306387|gb|FG996147.1|FG996147
EST:     TCCCAGTGCTTACAAATGGAACGGAAGATTACCCATTTACACTACTTACT                         GTAATTATACTAAAGGCTAGCGGAATTATTATACCAATGTACATAATTATT
genomic: TCCCAGTGCTTACAAATGGAACGGAAGATTACCCATTTACACTACTTACTgtaagtactt ... tttatgccagGTAATTATACTAAAGGCTAGCGGAATTATTATACCAATGTACATAATTATT
EST: gi|21594643|gb|BQ610219.1|BQ610219
EST:     TCCCAGTGCTTACAAATGGAACGGAAGATTACCCATTTACACTACTTACT                         GTAATTATACTAAAGGCTAGCGGAATTATTATACCAATGTACATAATTATT
genomic: TCCCAGTGCTTACAAATGGAACGGAAGATTACCCATTTACACTACTTACTgtaagtactt ... tttatgccagGTAATTATACTAAAGGCTAGCGGAATTATTATACCAATGTACATAATTATT
EST: gi|254325077|gb|GR834502.1|GR834502
EST:     TCCCAGTGCTTACAAATGGAACGGAAGATTACCCATTTACACTACTTACT                         GTAATTATACTAAAGGCTAGCGGAATTATTATACCAATGTACATAATTATT
genomic: TCCCAGTGCTTACAAATGGAACGGAAGATTACCCATTTACACTACTTACTgtaagtactt ... tttatgccagGTAATTATACTAAAGGCTAGCGGAATTATTATACCAATGTACATAATTATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTTACACTAGTCTTACTTGTAAGACATCTTTTCCCAGTGCTTACAAATGGAACGGAAGATTACCCATTTACACTACTTACTgtaagtacttgtttcaccgtttttaataaatacatctacaatctttgcccacggacagctaaattaatgaaacttctcatactatttttatgccag

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