Sequence
atgc intronic sequence ATGC exonic sequenceCATATTAACTAAAGTTGAAGATATAATCCCAAAGTGGAAGATAGTTCCCACAAAGGATGTCATCGATTCAGCCTTTAAAGACCCTGCTAAACGAGAGAGGgtgaggtttatattgtaaattgtaattgagatgcttgcttaaatgacttaaagtcttgttgatttagtgctagggttaactaatgtgcctcttcctatgagggtcattgcag
Basic information
species | Glycine max |
transcript | GLYMA03G37290.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G37290.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os05g29974.2 (Oryza sativa), 5'ss of exon 6
CATATTAACTAAAGTTGAAGATATAATCCCAAAGTGGAAGATAGTTCCCACAAAGGATGTCATCGATTCAGCCTTTAAAGACCCTGCTAAACGAGAGAGGgt---gaggttt-----atattgtaaattgtaat---------tgagatgcttgcttaa--atgacttaaagtcttgttgatttagtgctagg---gttaactaatgtgcctcttcctatgagggtcattgcag-----------------------------------
| | || | || || || || ||||| ||||||||||| || ||||| ||||| |||||||| || ||||| |||||||| || || || | ||| | |||| || || ||||| | |||| | | ||| ||| | |||||| ||| | || | | || || | | ||| | |||
GCTCCTGACGCAGGTGGAGGAGATCATCCCCAAGTGGAAGATCGTCCCCACCAAGGACGTCATCGACTCTGCCTTCAAAGACCCCATCAAGCGCGAAAAGgttcaaacgtttgagcaattcaccaatttgtattgtcagaatgcaagattcagacctaatcatgctgcgagatcttgtgtgttttgagcaaagaatgtaggaaaaagagagagagagagagagagagattctgttttctgaaactgttttcttgtgaacaattgagcag
upper sequence: GLYMA03G37290.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G62860.1 (Arabidopsis thaliana), 5'ss of exon 6
CATATTAACTAAAGTTGAAGATATAATCCCAAAGTGGAAGATAGTTCCCACAAAGGATGTCATCGATTCAGCCTTTAAAGACCCTGCTAAACGAGAGAGGgtgaggtttatattgtaaattgtaattgagatgcttgcttaaatgacttaaagtcttgttgatttagtgctagggttaactaatgtgcctcttcctatgagggtcattgcag
|| |||| | |||||||||||| || ||||| |||||||||||||| ||||| ||||| |||||| | ||||| || || || | || || || ||||| ||| |||| || | | || ||| ||| | | || | || || | |||||
TCTACTAACGAGAGTTGAAGATATTATACCAAAATGGAAGATAGTTCCTACAAAAGATGTTATCGATGCTGCCTTCAAGGATCCGGTCAAGCGCGAA-----GAGgtatat-----------taatcgaatcagtcaac-acataactaaaaagtgtactaataaaaaacttggttcctaaaatgtag------------------------
upper sequence: GLYMA03G37290.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv07s0005g00510.t01 (Vitis vinifera), 5'ss of exon 6
CATATTAACTAAAGTTGAAGATATAATCCCAAAGTGGAAGATAGTTCCCACAAAGGATGTCATCGATTCAGCCTTTAAAGACCCTGCTAAACGAGAGAGGgtga-ggtttatattgtaaattgtaattgagatgcttgcttaaatgacttaaagtcttgttgatttagtgctagggttaactaatgtgcctcttcctatgagggtcattgcag
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TATATTAACAAAAGTGGAAGAGATAATACCAAAGTGGAAGATAGTGCCCACAAAGGATGTAATAGATTCTGCATTCAAGGACCCTGTTAAGAGAGAAGAGgtgatgatatatatc-tgttttccaacttctagtcccatatatttctctcatgtaaacgtgggattctgaacagcattgctttctgtcgttaataatgcgcag----------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|17519393|gb|BM188435.1|BM188435EST: CAAAGGATGTCATCGATTCAGCCTTTAAAGACCCTGCTAAACGAGAGAGG ATAAGGAAAAACAAGTTGATATACCAGGACAAGCCAAGGCTAAAAACAGCA
genomic: CAAAGGATGTCATCGATTCAGCCTTTAAAGACCCTGCTAAACGAGAGAGGgtgaggttta ... gtcattgcagATAAGGAAAAACAAGTTGATATACCAGGACAAGCCAAGGCTAAAAACAGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CATATTAACTAAAGTTGAAGATATAATCCCAAAGTGGAAGATAGTTCCCACAAAGGATGTCATCGATTCAGCCTTTAAAGACCCTGCTAAACGAGAGAGGgtgaggtttatattgtaaattgtaattgagatgcttgcttaaatgacttaaagtcttgttgatttagtgctagggttaactaatgtgcctcttcctatgagggtcattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG