1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AGGAAAATCTTCAAAAGGAACCTCGCATCATGGAACTTAGGAATCAAgtaagaatacaatcctatggttagtatgcttttttcttttcaattcattgctgactactgaatttttcttcttcctcccatggaaacag
species | Glycine max |
transcript | GLYMA03G34540.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGGAAAATCTTCAAAAGGAACCTCGCATCATGGAACTTAGGAATCAA TGTAGAATAATTCGAACAACTGAGTTAGCTGCTGCTAAGGAGAAATTAAATEST: gi|151404521|gb|EV274335.1|EV274335
genomic: AGGAAAATCTTCAAAAGGAACCTCGCATCATGGAACTTAGGAATCAAgtaagaatac ... atggaaacagTGTAGAATAATTCGAACAACTGAGTTAGCTGCTGCTAAGGAGAAATTAAAT
EST: CAGAGGAAAATCTTCAAAAGGAACCTCGCATCATGGAACTTAGGAATCAA TGTAGAATAATTCGAACAACTGAGTTAGCTGCTGCTAAGGAGAAATTAAATEST: gi|58015690|gb|CX702432.1|CX702432
genomic: CAGAGGAAAATCTTCAAAAGGAACCTCGCATCATGGAACTTAGGAATCAAgtaagaatac ... atggaaacagTGTAGAATAATTCGAACAACTGAGTTAGCTGCTGCTAAGGAGAAATTAAAT
EST: AGGAAAATCTTCAAAAGGAACCTCGCATCATGGAACTTAGGAATCAA TGTAGAATAATTCGAACAACTGAGTTAGCTGCTGCTAAGGAGAAATTAAATEST: gi|213610992|gb|DB970919.1|DB970919
genomic: AGGAAAATCTTCAAAAGGAACCTCGCATCATGGAACTTAGGAATCAAgtaagaatac ... atggaaacagTGTAGAATAATTCGAACAACTGAGTTAGCTGCTGCTAAGGAGAAATTAAAT
EST: AGGAAAATCTTCAAAAGGAACCTCGCATCATGGAACTTAGGAATCAA TGTAGAATAATTCGAACAACTGAGTTAGCTGCTGCTAAGGAGAAATTAAATEST: gi|10848192|gb|BF070735.1|BF070735
genomic: AGGAAAATCTTCAAAAGGAACCTCGCATCATGGAACTTAGGAATCAAgtaagaatac ... atggaaacagTGTAGAATAATTCGAACAACTGAGTTAGCTGCTGCTAAGGAGAAATTAAAT
EST: AGGAAAATCTTCATAAGGAACCTCCCATCGTGGAACTTAAGAATCAA TGTAGAATAATTCGAACAACTTAGTTAGCTTCTGCTTAGGAGAAATTAAATEST: gi|151395409|gb|EV265286.1|EV265286
genomic: AGGAAAATCTTCAAAAGGAACCTCGCATCATGGAACTTAGGAATCAAgtaagaatac ... atggaaacagTGTAGAATAATTCGAACAACTGAGTTAGCTGCTGCTAAGGAGAAATTAAAT
EST: AGGAAAATCTTCAAAAGGAACCTCGCATCATGGAACTTAGGAATCAA TGTAGAATAATTCGAACAACTGAGTTAGCTGCTGCTAAGGAGAAATTAAATEST: gi|213601793|gb|DB982518.1|DB982518
genomic: AGGAAAATCTTCAAAAGGAACCTCGCATCATGGAACTTAGGAATCAAgtaagaatac ... atggaaacagTGTAGAATAATTCGAACAACTGAGTTAGCTGCTGCTAAGGAGAAATTAAAT
EST: ATCATGGAACTTAGGAATCAA TGTAGAATAATTCGAACAACTGAGTTAGCTGCTGCTAAGGAGAAATTAAATEST: gi|254348136|gb|GR851815.1|GR851815
genomic: ATCATGGAACTTAGGAATCAAgtaagaatac ... atggaaacagTGTAGAATAATTCGAACAACTGAGTTAGCTGCTGCTAAGGAGAAATTAAAT
EST: AGGAAAATCTTCAAAAGGAACCTCGCATCATGGAACTTAGGAATCAA TGTAGAATAATTCGAACAACTGAGTTAGCTGCTGCTAAGGAGAAATTAAATEST: gi|27427318|gb|CA938838.1|CA938838
genomic: AGGAAAATCTTCAAAAGGAACCTCGCATCATGGAACTTAGGAATCAAgtaagaatac ... atggaaacagTGTAGAATAATTCGAACAACTGAGTTAGCTGCTGCTAAGGAGAAATTAAAT
EST: AGGAAAATCTTCAAAAGGAACCTCGCATCATGGAACTTAGGAATCAA TGTAGAATAATTCGAACAACTGAGTTAGCTGCTGCTAAGGAGAAATTAAATEST: gi|192328158|gb|FK020419.1|FK020419
genomic: AGGAAAATCTTCAAAAGGAACCTCGCATCATGGAACTTAGGAATCAAgtaagaatac ... atggaaacagTGTAGAATAATTCGAACAACTGAGTTAGCTGCTGCTAAGGAGAAATTAAAT
EST: AGGAAAATCTTCAAAAGGAACCTCGCATCATGGAACTTAGGAATCAA TGTAGAATAATTCGAACAACTGAGTTAGCTGCTGCTAAGGAGAAATTAAAT
genomic: AGGAAAATCTTCAAAAGGAACCTCGCATCATGGAACTTAGGAATCAAgtaagaatac ... atggaaacagTGTAGAATAATTCGAACAACTGAGTTAGCTGCTGCTAAGGAGAAATTAAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGAAAATCTTCAAAAGGAACCTCGCATCATGGAACTTAGGAATCAAgtaagaatacaatcctatggttagtatgcttttttcttttcaattcattgctgactactgaatttttcttcttcctcccatggaaacag
- - - - - - - AAGGAA
- - - - - - - - - - - - - - CATGGA