1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GATGCTCCAAGTTCCTGGTGCAACAAGTTACATGGGTGGCATAGGAAAGGATAAGTTTGGGGAAGAGATGAAGAAGAACTCAAGGCTTGCTGGTGTAAATgtaggttcaatgttatgatttatcttctcctttcattgtcatgtgcttctgtgtactggctgttttagaaaattaacttatttactcatccatcag
species | Glycine max |
transcript | GLYMA03G33910.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ATAAGTTTGGGGAAGAGATGAAGAAGAACTCAAGGCTTGCTGGTGTAAAT GTTCACTATTATGAAGATGAAACTACACCTACTGGAACTTGTGCTGTTTGTEST: gi|298190129|gb|HO032250.1|HO032250
genomic: ATAAGTTTGGGGAAGAGATGAAGAAGAACTCAAGGCTTGCTGGTGTAAATgtaggttcaa ... catccatcagGTTCACTATTATGAAGATGAAACTACACCTACTGGAACTTGTGCTGTTTGT
EST: ATGAGTTTGGGGAAGAGATGAAGAAGAACTCAAGGCTTGCTGGTGTAAAT GTTCACTATTATGAAGATGAAACTACACCTACTGGAACTTGTGCTGTTTGTEST: gi|7684823|gb|AW755471.1|AW755471
genomic: ATAAGTTTGGGGAAGAGATGAAGAAGAACTCAAGGCTTGCTGGTGTAAATgtaggttcaa ... catccatcagGTTCACTATTATGAAGATGAAACTACACCTACTGGAACTTGTGCTGTTTGT
EST: ATAAGTTTGGGGAAGAGATGAAGAAGAACTCAAGGCTTGCTGGTGTAAAT GTTCACTATTATGAAGATGAAACTACACCTACTGGAACTTGTGCTGTTTGTEST: gi|254342530|gb|GR858692.1|GR858692
genomic: ATAAGTTTGGGGAAGAGATGAAGAAGAACTCAAGGCTTGCTGGTGTAAATgtaggttcaa ... catccatcagGTTCACTATTATGAAGATGAAACTACACCTACTGGAACTTGTGCTGTTTGT
EST: ATAAGTTTGGGGAAGAGATGAAGAAGAACTCAAGGCTTGCTGGTGTAAAT GTTCACTATTATGAAGATGAAACTACACCTACTGGAACTTGTGCTGTTTGTEST: gi|298189605|gb|HO038008.1|HO038008
genomic: ATAAGTTTGGGGAAGAGATGAAGAAGAACTCAAGGCTTGCTGGTGTAAATgtaggttcaa ... catccatcagGTTCACTATTATGAAGATGAAACTACACCTACTGGAACTTGTGCTGTTTGT
EST: ATAAGTTTGGGGAAGAGATGAAGAAGAACTCAAGGCTTGCTGGTGTAAAT GTTCACTATTATGAAGATGAAACTACACCTACTGGAACTTGTGCTGTTTGT
genomic: ATAAGTTTGGGGAAGAGATGAAGAAGAACTCAAGGCTTGCTGGTGTAAATgtaggttcaa ... catccatcagGTTCACTATTATGAAGATGAAACTACACCTACTGGAACTTGTGCTGTTTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGCTCCAAGTTCCTGGTGCAACAAGTTACATGGGTGGCATAGGAAAGGATAAGTTTGGGGAAGAGATGAAGAAGAACTCAAGGCTTGCTGGTGTAAATgtaggttcaatgttatgatttatcttctcctttcattgtcatgtgcttctgtgtactggctgttttagaaaattaacttatttactcatccatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC