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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGTTGTACTTGTATTGCATGGGTGCCTGGAGGTGATGGTTCTTTTGTTGTTTCTCACACTGATGGGAATTTGTATGTATACGAAAAGgcaagtctcaatcatcaaaagagaaacttactttatggttcatttatgaatatctttcttatgatgagttaagtagatatttacctcttctttcctatttcag

Basic information

species Glycine max
transcript GLYMA03G33740.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G33740.1 (Glycine max), 5'ss of exon 5
lower sequence: AT2G37160.1 (Arabidopsis thaliana), 5'ss of exon 5
TCGTTGTACTTGTATTGCATGGGTGCCTGGAGGTGATGGTTCTTTTGTTGTTTCTCACACTGATGGGAATTTGTATGTATACGAAAAGgcaagtctcaatcatcaaaagagaaacttactttatggttcatttatgaatatctttcttatgatgagttaagtagatatttacctcttctttcctatttcag
 || |||||| |||| || |||||||||||||||||||| || ||||||| | ||||  | ||||| ||| |||| ||||| ||||||||||||  ||   ||  ||| ||||| | |||||     |||||    |||   ||| | |  |  | |||  |   || |||  | | ||| |         
CCGCTGTACTAGTATAGCTTGGGTGCCTGGAGGTGATGGATCCTTTGTTGCTGCTCATGCCGATGGAAATCTGTACGTATATGAAAAGgcaagtg-cagatattgaaaaagaaattgacttt-----tcattacctaat---tttgtcaaaaaaatttacctgagtaattat-tatacttgcag-------

upper sequence: GLYMA03G33740.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G53390.1 (Arabidopsis thaliana), 5'ss of exon 5
TCGTTGTACTTGTATTGCATGGGTGCCTGGAGGTGATGGTTCTTTTGTTGTTTCTCACACTGATGGGAATTTGTATGTATACGAAAAGgcaagtctcaatcatcaaaagagaaacttactttatggttcatttatgaatatctttcttatgatgagttaagtagatatttacctcttctttcctatttcag
|||||| ||| ||||| | ||||||||||||||||||||  | ||||| ||| ||||  | ||||| ||||||||||| || || |||||||| ||||   |||| ||       ||   ||     | | || | | |  | |  || ||   | |      |||  | |    ||       ||     
TCGTTGCACTAGTATTTCTTGGGTGCCTGGAGGTGATGGAGCATTTGTCGTTGCTCATGCCGATGGCAATTTGTATGTGTATGAGAAGgcaag-ctcagatatcagaatttg---ttttcttgcatatgacttttaagttgcctgattttgtctaatcc--ctgatcctgattaatttaacttaatag---

upper sequence: GLYMA03G33740.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv08s0040g01960.t01 (Vitis vinifera), 5'ss of exon 5
TCGTTGTACTTGTATTGCATGGGTGCCTGGAGGTGATGGTTCTTTTGTTGTTTCTCACACTGATGGGAATTTGTATGTATACGAAAAGgcaagtctcaatcatcaaaagagaaacttactttatggttcatttatgaatatctttc--ttatg--atgagttaagtaga-tatttacctcttctttcctatttcag
 ||||||||| | ||||||||||| ||||  ||||||||| |||| |||||| ||||  ||||||| |||||||| || || || |||||||| |||||  | ||  ||| | | |     | |      ||||  | | |  |||  ||||   || |  | | | || | | ||     | ||| |||      
CCGTTGTACTAGCATTGCATGGGTCCCTGATGGTGATGGTGCTTTCGTTGTTGCTCATGCTGATGGAAATTTGTACGTGTATGAGAAGgcaagcctcaaata-cagtagaaatattgttcatttcagctgtttaacattcttattccattattctataaactgactggagtgtgtaatcaattttttctag-----