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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCAAGGTTTGGATATGATCGCAGAAGGATTGGATACTTTGAAAAACATGGCACATGATATGAATGAGgtcagattcctgttgtgtttgtctttctctttctttttgtgtccccccccacatttaagttcattatttatgtaccaaatacag

Basic information

species Glycine max
transcript GLYMA03G33680.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G33680.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os05g48020.1 (Oryza sativa), 5'ss of exon 5
GATCAAGGTTTGGATATGATCGCAGAAGGATTGGATACTTTGAAAAACATGGCACATGATATGAATGAGgtcagattcctgttgtg-tttgtctttctctttctttttgtgtccccccccacatttaagttcattatttatgtaccaaatacag----------------
||| ||||||||||||| ||||  |||||  |||| ||| ||||||||||||||  |||||||||||||||  |     || |||| ||  ||||    | |    |  | | |    | |   |||  |  |  ||  |  |||||    ||                 
GATGAAGGTTTGGATATTATCGGTGAAGGGCTGGAAACTCTGAAAAACATGGCATCTGATATGAATGAGgttgg----ttgctgtgcttcatcttgagttatacaatactatacgatgcaatggttatatgaaacat--agttaccatgctcaatttttgtgatcatcag

upper sequence: GLYMA03G33680.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G057251_T01 (Zea mays), 5'ss of exon 5
GATCAAGGTTTGGATATGATCGCAGAAGGATTGGATACTTTGAAAAACATGGCACATGATATGAATGAGgtcagattcc-tgttgtgtttgtctttctctttctttttgt--gtccccccccacatttaagttcattatttatgtaccaaatacag
||| ||||||||||  | || |  |||||| |||| ||||||||||||||||||  |||||||||||||||    | |     |   ||| | | | |  |  |||| ||  ||      | ||        | | |   ||  | | |  | |||
GATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATGGCATCTGATATGAATGAGgttgtttgctgcacttgatttttttatatggtaattttagtaagttaaggacaactaactgactaactgagtaactgcgatcttcag

upper sequence: GLYMA03G33680.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv08s0040g02130.t01 (Vitis vinifera), 5'ss of exon 5
GATCAAGGTTTGGATATGATCGCAGAAGGATTGGATACTTTGAAAAACATGGCACATGATATGAATGAGgtcagattcctgttgtgtttgtctttctctttctttttgtgtccccccccacatttaagttcattat-ttatgtaccaaatacag
|| |||||||||||| |||| |||||||| ||||| || |||||||||||||| |||||||||||||||||  |  |    || | ||| | || || | | ||||| |||   |     | ||  | |||||||  ||||| |     | |||
GACCAAGGTTTGGATGTGATAGCAGAAGGTTTGGACACATTGAAAAACATGGCCCATGATATGAATGAGgtttg-ctatcattttctttattttcctatgtttttttctgtattcaagggcctt--aattcattacattatgaaatttgtgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19053265|gb|BM731932.1|BM731932
EST:     TCGCAGAAGGATTGGATACTTTGAAAAACATGGCACATGATATGAATGAG                         GAACTGGATAGACAAGTTCCACTGATGGACGAGATTGATACTAAG
genomic: TCGCAGAAGGATTGGATACTTTGAAAAACATGGCACATGATATGAATGAGgtcagattcc ... ccaaatacagGAACTGGATAGACAAGTTCCACTGATGGACGAGATTGATACTAAG
EST: gi|31471750|gb|CD413778.1|CD413778
EST:     TCGCAGAAGGATTGGATACTTTGAAAAACATGGCACATGATATGAATGAG                         GAACTGGATAGACAAGTTCCACTGATGGACGAGATTGATACTAAG
genomic: TCGCAGAAGGATTGGATACTTTGAAAAACATGGCACATGATATGAATGAGgtcagattcc ... ccaaatacagGAACTGGATAGACAAGTTCCACTGATGGACGAGATTGATACTAAG
EST: gi|192294446|gb|FG987375.1|FG987375
EST:     TCGCAGAAGGATTGGATACTTTGAAAAACATGGCACATGATATGAATGAG                         GAACTGGATAGACAAGTTCCACTGATGGACGAGATTGATACTAAAGTGGAC
genomic: TCGCAGAAGGATTGGATACTTTGAAAAACATGGCACATGATATGAATGAGgtcagattcc ... ccaaatacagGAACTGGATAGACAAGTTCCACTGATGGACGAGATTGATACTAAGGTGGAC