Sequence
atgc intronic sequence ATGC exonic sequenceCAGCCTACAATCAAAAGAACAAATCGAAGCCAAGTTACTTAGCAAGTATGAAGCTACTACGAGAAGAGAAAGAGCGCTGGCTTATGCATTCACTCATCAGgtttttctatttttctcaacaatttatacatgcgaggaaatgaatgaaaaatttaatatgaaccggaaaatcttttaaaaaaatatcatattataaactc...
Basic information
species | Glycine max |
transcript | GLYMA03G33560.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G33560.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv08s0040g02360.t01 (Vitis vinifera), 5'ss of exon 5
CAGCCTACAATCAAAAGAACAAATCGAAGCCAAGTTACTTAGCAAGTATGAAGCTACTACGAGAAGAGAAAGAGCGCTGGCTTATGCATTCACTCATCAGgtttttctatttttctcaacaattta-tacatgcgaggaaat----gaatgaaaaatttaata--tgaaccggaaaatc-ttttaaaaaaatatcatattataaactc--------------------------------------------------------------------------------
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CAGCCTACAATCAAAAGAACAAATTGAAGCAGGCCTATTAAACAAGCAAGGGGCAGCAATGAGAAGAGAAAGGGCACTGGCTTATGCATTTTCTCATCAGgtatc-ctattcatcaatactgtttcctgcccattatccatttttaggatcaagaactcactggttggatcttccagttatcttggtatgaaatggaaagaaaatcaaataccagtggtgcactcatgtagacacatgttttattattgcaaattcttgattaatccctgatggaattggtcctacag
upper sequence: GLYMA03G33560.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv08s0040g02360.t01 (Vitis vinifera), 5'ss of exon 5
CAGCCTACAATCAAAAGAACAAATCGAAGCCAAGTTACTTAGCAAGTATGAAGCTACTACGAGAAGAGAAAGAGCGCTGGCTTATGCATTCACTCATCAGgtttttctatttttctcaacaattta-tacatgcgaggaaat----gaatgaaaaatttaata--tgaaccggaaaatc-ttttaaaaaaatatcatattataaactc--------------------------------------------------------------------------------
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CAGCCTACAATCAAAAGAACAAATTGAAGCAGGCCTATTAAACAAGCAAGGGGCAGCAATGAGAAGAGAAAGGGCACTGGCTTATGCATTTTCTCATCAGgtatc-ctattcatcaatactgtttcctgcccattatccatttttaggatcaagaactcactggttggatcttccagttatcttggtatgaaatggaaagaaaatcaaataccagtggtgcactcatgtagacacatgttttattattgcaaattcttgattaatccctgatggaattggtcctacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19271218|gb|BM887474.1|BM887474EST: AAGCTACTACGAGAAGAGAAAGAGCGCTGGCTTATGCATTCACTCATCAG CAAAATTGGAAGAACTCATCTAGATCTGTAAATCCAATGTTCATGGATCCA
genomic: AAGCTACTACGAGAAGAGAAAGAGCGCTGGCTTATGCATTCACTCATCAGgtttttctat ... catttggcagCAAAATTGGAAGAACTCATCTAGATCTGTAAATCCAATGTTCATGGATCCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAGCCTACAATCAAAAGAACAAATCGAAGCCAAGTTACTTAGCAAGTATGAAGCTACTACGAGAAGAGAAAGAGCGCTGGCTTATGCATTCACTCATCAGgtttttctatttttctcaacaatttatacatgcgaggaaatgaatgaaaaatttaatatgaaccggaaaatcttttaaaaaaatatcatattataaactc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaaaaaa