Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgattttaacagtcactaatcttattggttctgatgcaacgactctgcaatttcaattggctgtagtttcagtagtcagaattgttttataacatctttgcttgtaagctgagttttggttaccttggttcttgccag

Basic information

species Glycine max
transcript GLYMA03G33270.3
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254332769|gb|GR846600.1|GR846600
EST:     CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG                         CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: gi|208156572|gb|GD956854.1|GD956854
EST:     CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG                         CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: gi|208294148|gb|GE096067.1|GE096067
EST:     GATCGAAGCTACAGCCGAGACCACAGCTACAG                         CCGATCGAAATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
genomic: GATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: gi|207693992|gb|GD675067.1|GD675067
EST:     GGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG                         CCGATCGAGATTTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
genomic: -GTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: gi|298199246|gb|HO042609.1|HO042609
EST:     CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG                         CCGATCGAGATCTCCCGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: gi|208254682|gb|GE051228.1|GE051228
EST:     CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG                         CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: gi|254344581|gb|GR855452.1|GR855452
EST:     CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG                         CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: gi|208318139|gb|GE114078.1|GE114078
EST:     CGTCGTGGAAGAAGCAGGGATCGAAGCAACAGCCGAGACCACAGCTACAG                         CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTT
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTT
EST: gi|207839844|gb|GD810037.1|GD810037
EST:     CGTCGTGGAAGAAGCAGGGATCGAAGCAACAGCCGAGACCACAGCTACAG                         CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTT
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTT
EST: gi|207765392|gb|GD738171.1|GD738171
EST:     CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG                         CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTT
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTT
EST: gi|208022923|gb|GD820933.1|GD820933
EST:     CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG                         CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: gi|254344582|gb|GR855453.1|GR855453
EST:     CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG                         CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: gi|31310837|gb|CD396040.1|CD396040
EST:     GCAGGGATCTAAGCTACAGCCGAGACCACAGCTACAG                         CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
genomic: GCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: gi|208276808|gb|GE073395.1|GE073395
EST:     CGTCGTGGAAGAAGCCGGGATCGAAGCTACAGCCGAGACCGCAACTACAG                         CCGATCGAGATCTCCAGTCAGAAGAGAACGAAGCCCAGTTT
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTT
EST: gi|16343628|gb|BI969223.1|BI969223
EST:     AGCTACAGCCGAGACCACAGCTACAG                         CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
genomic: AGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: gi|10256190|gb|BE823956.1|BE823956
EST:     CGTCGTNNNAGNNGCAGGGANCGAAGCTACAGCCGAGACCACAGCTACAG                         CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: gi|7692938|gb|AW761037.1|AW761037
EST:     CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG                         CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: gi|193626318|gb|FK572682.1|FK572682
EST:     CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG                         CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: gi|208233570|gb|GE031451.1|GE031451
EST:     CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG                         CCGATCGAGATCTCCT
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgattttaacagtcactaatcttattggttctgatgcaacgactctgcaatttcaattggctgtagtttcagtagtcagaattgttttataacatctttgcttgtaagctgagttttggttaccttggttcttgccag

- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC