Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACGGGATTGCAAAGCTGGGGATTGGAAGAATAAGTGTTACCGCTGTGGGGAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgcagtgctatttagtttccaaggtggtactgcttctgtgttttcttaacctgctttttccatttcaatggagtctctgagctctaaactgacgatgctaatctgtctgattcaag

Basic information

species Glycine max
transcript GLYMA03G33260.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G33260.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os05g02880.1 (Oryza sativa), 5'ss of exon 5
CACGGGATTGCAAAGCTGGGGATTGGAAGAATAAGTGTTACCGCTGTGGGGAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgcagtgctatttagtttccaaggtggtactgcttctgtgttttcttaacctgctttttccatttcaatggagtctctgagctctaaactgacgatgctaatctgtctgattcaag
|| | || ||||| ||||| || |||||||| || ||||||||||||||||||||||| || |||||||| |||||  | |||||||| | |||  | ||||||  | || ||  | | | |  |    |  | ||   ||   ||  |   ||    |  |  |||| |||    |  || || | |   |     || ||  ||| | |  ||||  
CAAGAGACTGCAAGGCTGGTGACTGGAAGAACAAATGTTACCGCTGTGGGGAGAGAGGTCACATAGAAAGAAACTGTCAAAACAGCCCAAGAAATCTCAGgtattgattgataagttgat-ctgataaagagcagcacttgcaattgtt---ccgaggtactgtatttgaataatttaacttagatttctccaatgcatact--tctttttttttcag-

upper sequence: GLYMA03G33260.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv08s0040g02860.t01 (Vitis vinifera), 5'ss of exon 3
CACGGGATTGCAAAGCTGGGGATTGGAAGAATAAGTGTTACCGCTGTGGGGAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgca---gtgctatttagtttccaaggtggtactgcttctgtgttttcttaacctgctttttccatttcaatggagtctctgagctctaaactg--acgatgctaa---tctgtctgattcaag-------------------
| || |||||||||||||| || ||||||||||||||||| || ||||| || ||||| ||||| ||||| |||||| ||||||| ||||  ||  | |||||| |     || |  |||  | ||||      | | ||    || |  ||| || |  ||||||||| | | |    |   | |||   | ||||  ||  ||| ||   | |||  | || ||                    
CTCGAGATTGCAAAGCTGGAGACTGGAAGAATAAGTGTTATCGGTGTGGAGAAAGAGGTCATATTGAAAGAAACTGCCAGAACAGTCCCAGGAAGCTCAGgtattctcatatggtgattacatgccaaa---acatttctctcctgctgccttgacat-ttttttccatatta-tatttttgttaagcatgatactgttactgtgcaaagtttttgttagcttaaaactattatgttatattgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208141696|gb|GD933546.1|GD933546
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgcagtg ... ctgattcaagCACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
EST: gi|192320618|gb|FK012028.1|FK012028
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgcagtg ... ctgattcaagCACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
EST: gi|193340265|gb|FK307886.1|FK307886
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACAAGGAACGAAGGACGGAGT-ATTCACGGTCACCAGTCAGGTCACATTC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgcagtg ... ctgattcaagCACAAGG--CGA-GGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTC
EST: gi|193474891|gb|FK442904.1|FK442904
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgcagtg ... ctgattcaagCACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
EST: gi|192319241|gb|FK006941.1|FK006941
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgcagtg ... ctgattcaagCACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
EST: gi|193455542|gb|FK420947.1|FK420947
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgcagtg ... ctgattcaagCACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
EST: gi|208074761|gb|GD870750.1|GD870750
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgcagtg ... ctgattcaagCACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
EST: gi|6094790|gb|AW119519.1|AW119519
EST:     TAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
genomic: TAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgcagtg ... ctgattcaagCACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
EST: gi|193683975|gb|FK622217.1|FK622217
EST:     AGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTAGAG                         CACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCAC
genomic: AGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATT-GAGgtatgcagtg ... ctgattcaagCACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCAC
EST: gi|207815548|gb|GD788699.1|GD788699
EST:     CCCCAAAAAATTGAG                         CACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
genomic: CCCCAAAAAATTGAGgtatgcagtg ... ctgattcaagCACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
EST: gi|193606363|gb|FK556066.1|FK556066
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgcagtg ... ctgattcaagCACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
EST: gi|193401033|gb|FK366756.1|FK366756
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACAAGGCGAGGACGGAGTTATTCAACGGTACAACCAGTCAGGTCACATTC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgcagtg ... ctgattcaagCACAAGGCGAGGACGGAGTTATTCA-CGGT-CA-CCAGTCAGGTCACATTC
EST: gi|298189291|gb|HO037694.1|HO037694
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgcagtg ... ctgattcaagCACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
EST: gi|207682941|gb|GD665396.1|GD665396
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgcagtg ... ctgattcaagCACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
EST: gi|208146444|gb|GD946267.1|GD946267
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACCATTCAC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgcagtg ... ctgattcaagCACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCAC-ATTCAC
EST: gi|193731772|gb|FK667012.1|FK667012
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgcagtg ... ctgattcaagCACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
EST: gi|208184911|gb|GD981145.1|GD981145
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgcagtg ... ctgattcaagCACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
EST: gi|193628763|gb|FK577263.1|FK577263
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgcagtg ... ctgattcaagCACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
EST: gi|192319242|gb|FK006942.1|FK006942
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgcagtg ... ctgattcaagCACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
EST: gi|298170069|gb|HO018693.1|HO018693
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgcagtg ... ctgattcaagCACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
EST: gi|208331364|gb|GE128941.1|GE128941
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgcagtg ... ctgattcaagCACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
EST: gi|193696809|gb|FK638427.1|FK638427
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgcagtg ... ctgattcaagCACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
EST: gi|208254595|gb|GE051197.1|GE051197
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGG
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgcagtg ... ctgattcaagCACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGG
EST: gi|193405818|gb|FK374371.1|FK374371
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCC-AAAAATTGAG                         CACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgcagtg ... ctgattcaagCACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
EST: gi|213589600|gb|DB965816.1|DB965816
EST:     AGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCNNNNNNNNNTTGAG                         CACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCAC
genomic: AGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAA---TTGAGgtatgcagtg ... ctgattcaagCACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCAC
EST: gi|5126685|gb|AI748421.1|AI748421
EST:     TAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
genomic: TAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgcagtg ... ctgattcaagCACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
EST: gi|207810591|gb|GD781700.1|GD781700
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgcagtg ... ctgattcaagCACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
EST: gi|193317520|gb|FK285336.1|FK285336
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAA-TTGAG                         CACAAGGCGAGGACGGAGTTATTCACGGT
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgcagtg ... ctgattcaagCACAAGGCGAGGACGGAGTTATTCACGGT
EST: gi|151403736|gb|EV273546.1|EV273546
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgcagtg ... ctgattcaagCACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
EST: gi|192324223|gb|FK017954.1|FK017954
EST:     AGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCNNNNNNNTTGAG                         CACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCAC
genomic: AGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAA-TTGAGgtatgcagtg ... ctgattcaagCACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCAC
EST: gi|213597756|gb|DB960313.1|DB960313
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgcagtg ... ctgattcaagCACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
EST: gi|208204988|gb|GE004503.1|GE004503
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCGGGTCACATTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgcagtg ... ctgattcaagCACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
EST: gi|207760925|gb|GD731980.1|GD731980
EST:     CCCCAAAAAATTGAG                         CACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
genomic: CCCCAAAAAATTGAGgtatgcagtg ... ctgattcaagCACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
EST: gi|193301442|gb|FK266839.1|FK266839
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgcagtg ... ctgattcaagCACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTC
EST: gi|207783160|gb|GD757181.1|GD757181
EST:     AGAAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
genomic: AG-AGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgcagtg ... ctgattcaagCACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
EST: gi|193331114|gb|FK294156.1|FK294156
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgcagtg ... ctgattcaagCACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
EST: gi|208109138|gb|GD903944.1|GD903944
EST:     CCAAAAAATTGAG                         CACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
genomic: CCAAAAAATTGAGgtatgcagtg ... ctgattcaagCACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
EST: gi|208156783|gb|GD957289.1|GD957289
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgcagtg ... ctgattcaagCACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
EST: gi|193685591|gb|FK625433.1|FK625433
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgcagtg ... ctgattcaagCACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
EST: gi|193703465|gb|FK640093.1|FK640093
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACAAGGCGAGGAACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCAC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgcagtg ... ctgattcaagCACAAGGCGAGG-ACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCAC
EST: gi|207760412|gb|GD731383.1|GD731383
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgcagtg ... ctgattcaagCACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
EST: gi|193591009|gb|FK546856.1|FK546856
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgcagtg ... ctgattcaagCACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
EST: gi|208301030|gb|GE100725.1|GE100725
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACAAGGCGAGGACGGAGTTATTCA
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgcagtg ... ctgattcaagCACAAGGCGAGGACGGAGTTATTCA
EST: gi|193341261|gb|FK306445.1|FK306445
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgcagtg ... ctgattcaagCACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
EST: gi|298193736|gb|HO040384.1|HO040384
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACAAGGCGAGGACGGAGTTATTCACGGTCACCAGT
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgcagtg ... ctgattcaagCACAAGGCGAGGACGGAGTTATTCACGGTCACCAGT
EST: gi|193482768|gb|FK447475.1|FK447475
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgcagtg ... ctgattcaagCACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
EST: gi|192334590|gb|FK025179.1|FK025179
EST:     AGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCNNNNNNNTTGAG                         CACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCAC
genomic: AGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAA-TTGAGgtatgcagtg ... ctgattcaagCACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCAC
EST: gi|193361701|gb|FK328249.1|FK328249
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgcagtg ... ctgattcaagCACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
EST: gi|12773049|gb|BG237976.1|BG237976
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgcagtg ... ctgattcaagCACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
EST: gi|193522384|gb|FK479919.1|FK479919
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCC-AAAAATTGAG                         CACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgcagtg ... ctgattcaagCACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
EST: gi|193458479|gb|FK422000.1|FK422000
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgcagtg ... ctgattcaagCACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CACGGGATTGCAAAGCTGGGGATTGGAAGAATAAGTGTTACCGCTGTGGGGAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgcagtgctatttagtttccaaggtggtactgcttctgtgttttcttaacctgctttttccatttcaatggagtctctgagctctaaactgacgatgctaatctgtctgattcaag

- - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC