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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATTTGTATTgtaagtatttattgatatttgtaatttaattaaatgacaggaatgtctattcaatcatgcttaaatattctgtgagttaaaaaacttgcggatggatttaaatggtttcaacag

Basic information

species Glycine max
transcript GLYMA03G33100.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G33100.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os01g62080.1 (Oryza sativa), 5'ss of exon 7
TTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATTTGTATTgtaagtatttattgatatttgtaatttaattaaatgacaggaatgtctattcaatcatgcttaaatattctgtgagttaaaaaacttgcggatggatttaaatggtttcaacag
 ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||  | |  ||         ||  ||  |||    | |||   |     | ||  | || || |   |  || |                                   
CTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATATGTATAgtaagtacatgtgcatcaagaaggcttcctttcatgttttggatggtcagaatttaatattgaattactaactttgtcag----------------------------------

upper sequence: GLYMA03G33100.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G386991_T01 (Zea mays), 5'ss of exon 5
TTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATTTGTATTgtaagtatttattgatatttgtaatttaattaaatgacaggaatgtctattcaatcatgcttaaatattctgtgagttaaaaaacttgcggatggatttaaatggtttcaacag
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||   |||   |      ||      || |    |    | | |  |  |||| | |   |||||    || || |  | ||                            
TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATTTGTATAgtaagtgaatatgcgt-----caagaaggctatactttacttgtttttgat-gatcaggttatgatatt----gaattgatgatctcttcag----------------------

upper sequence: GLYMA03G33100.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G53570.4 (Arabidopsis thaliana), 5'ss of exon 7
TTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATTTGTATTgtaagtatttattgatatttgtaatttaattaaatgacaggaatgt-ctattcaatcatgcttaaatattctgtgagttaaaa-aacttgcggatggatttaaatggtttcaacag
|||||||||||||||||||||||||||||||||||||||||||||||||||||||      || ||  | || || |      |||  ||||  | | |||   ||| ||  |||| || |||||||||||| |||||||| |||| ||||||||||||||||||
TTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATTTGTATTgtaagtg----ctgttacctttatttgacaagtttgaggggaaaatgcaatttcttcacgcccaaatgttatgtgagttaaaagaacttgcgcatgggtttaaatggtttcaacag

upper sequence: GLYMA03G33100.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G53570.4 (Arabidopsis thaliana), 5'ss of exon 7
TTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATTTGTATTgtaagtatttattgatatttgtaatttaattaaatgacaggaatgt-ctattcaatcatgcttaaatattctgtgagttaaaa-aacttgcggatggatttaaatggtttcaacag
|||||||||||||||||||||||||||||||||||||||||||||||||||||||      || ||  | || || |      |||  ||||  | | |||   ||| ||  |||| || |||||||||||| |||||||| |||| ||||||||||||||||||
TTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATTTGTATTgtaagtg----ctgttacctttatttgacaagtttgaggggaaaatgcaatttcttcacgcccaaatgttatgtgagttaaaagaacttgcgcatgggtttaaatggtttcaacag

upper sequence: GLYMA03G33100.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv08s0040g02640.t01 (Vitis vinifera), 5'ss of exon 5
TTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATTTGTATTgtaagtatttattgatatttgtaatttaattaaatgacagg---aatgtctattcaatcatgcttaaatattctgtgagttaaaaaacttgcggatggatttaaatggtttcaacag
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||| ||| | |   |||   |||   | ||   |  ||| |||||||||||||||||||||| |||||||||||||||||||||||| | |||
TTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATTTGTATTgtaagtatttattggtacttgtgatttgattcatttgaaggggcaatccatgttgttttgtgcctaaatattctgtgagttaaaaa-cttgcggatggatttaaatggtttgagcag