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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCTGGTGCTCCAACGATCTTCAATTGTgtaagtctgcccaaatagtaaactaaacatttcattgtagaatgtaggacccgtgtagttcacatatgcttgtagaataatcaaatttcttcagaacttg...

Basic information

species Glycine max
transcript GLYMA03G33000.4
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192298048|gb|FG991328.1|FG991328
EST:     GGCCTGGTGCTCCAACGATCTTCAATTGT                         GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACNNNNNN
genomic: GGCCTGGTGCTCCAACGATCTTCAATTGTgtaagtctgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAA
EST: gi|207840938|gb|GD810193.1|GD810193
EST:     GGCCTGGTGCTCCAACGATCTTCAATTGT                         GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAA
genomic: GGCCTGGTGCTCCAACGATCTTCAATTGTgtaagtctgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAA
EST: gi|207831666|gb|GD801720.1|GD801720
EST:     CTGGTGCTCCTAACGATTCTTTCAATTGT                         GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAA
genomic: CTGGTGCTCC-AACGA-TC-TTCAATTGTgtaagtctgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAA
EST: gi|193320747|gb|FK283132.1|FK283132
EST:     GGCCTGGTGCTCCAACGATCTTCAATCGT                         GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAA
genomic: GGCCTGGTGCTCCAACGATCTTCAATTGTgtaagtctgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAA
EST: gi|27446381|gb|CA953504.1|CA953504
EST:     GGCCTGGTGCTCCAACGATCTTCAATTGT                         GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAA
genomic: GGCCTGGTGCTCCAACGATCTTCAATTGTgtaagtctgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAA
EST: gi|10236851|gb|BE805739.1|BE805739
EST:     GGCCTGGTGCTCCAACGATCTTCAATTGT                         GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAA
genomic: GGCCTGGTGCTCCAACGATCTTCAATTGTgtaagtctgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAA
EST: gi|208275603|gb|GE078223.1|GE078223
EST:     GGCCTGGTGCTCCAACGATCTTCAATTGT                         GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAA
genomic: GGCCTGGTGCTCCAACGATCTTCAATTGTgtaagtctgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAA
EST: gi|5510301|gb|AI856743.1|AI856743
EST:     GGCCTGGTGCTCCAACGATCTTCAATTGT                         GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAA
genomic: GGCCTGGTGCTCCAACGATCTTCAATTGTgtaagtctgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAA
EST: gi|7925031|gb|AW831057.1|AW831057
EST:     GGCCTGGTGCTCCAACGATCTTCAATTGT                         GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAA
genomic: GGCCTGGTGCTCCAACGATCTTCAATTGTgtaagtctgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAA
EST: gi|298199436|gb|HO042799.1|HO042799
EST:     GGCCTGGTGCTCCAACGATCTTCAATTGT                         GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAA
genomic: GGCCTGGTGCTCCAACGATCTTCAATTGTgtaagtctgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAA
EST: gi|192296495|gb|FG989111.1|FG989111
EST:     GGCCTGGTGCTCCAACGATCTTCAATTGT                         GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAA
genomic: GGCCTGGTGCTCCAACGATCTTCAATTGTgtaagtctgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAA
EST: gi|16105384|gb|BI893124.1|BI893124
EST:     GGCCTGGTGCTCCAACGATCTTCAATTGT                         GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAA
genomic: GGCCTGGTGCTCCAACGATCTTCAATTGTgtaagtctgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAA
EST: gi|8827754|gb|BE211484.1|BE211484
EST:     GGCCTGGTGCTCCAACGATCTTCAATTGT                         GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAA
genomic: GGCCTGGTGCTCCAACGATCTTCAATTGTgtaagtctgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAA
EST: gi|7588509|gb|AW704365.1|AW704365
EST:     GGCCTGGTGCTCCAACGATCTTCAATTGT                         GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAA
genomic: GGCCTGGTGCTCCAACGATCTTCAATTGTgtaagtctgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAA
EST: gi|9986811|gb|BE660919.1|BE660919
EST:     GGCCTGGTGCTCCAACGATCTTCAATTGT                         GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAA
genomic: GGCCTGGTGCTCCAACGATCTTCAATTGTgtaagtctgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAA
EST: gi|192324459|gb|FK015810.1|FK015810
EST:     GGCCTGGTGCTCCAACGATCTTCAATTGT                         GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAA
genomic: GGCCTGGTGCTCCAACGATCTTCAATTGTgtaagtctgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAA
EST: gi|7588510|gb|AW704234.1|AW704234
EST:     GGCCTGGTGCTCCAACGATCTTCAATTGT                         GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAA
genomic: GGCCTGGTGCTCCAACGATCTTCAATTGTgtaagtctgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAA
EST: gi|151404690|gb|EV274504.1|EV274504
EST:     GGCCTGGTGCTCCAACGATCTTCAATTGT                         GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAA
genomic: GGCCTGGTGCTCCAACGATCTTCAATTGTgtaagtctgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAA
EST: gi|207702226|gb|GD682981.1|GD682981
EST:     GGCCTGGTGCTCCAACGATCTTCAATTGT                         GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAA
genomic: GGCCTGGTGCTCCAACGATCTTCAATTGTgtaagtctgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAA
EST: gi|17022987|gb|BM094021.1|BM094021
EST:     GGCCTGGTGCTCCAACGATCTTCAATTGT                         GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAA
genomic: GGCCTGGTGCTCCAACGATCTTCAATTGTgtaagtctgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAA