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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCCATTGCATCCACATATACTTGCTAGTGGGAGCTTGGATCAAGAAGTTCGTTTATGGGATGCTAACACATCAGAGTGCATAATATCTCATCATTTCTgtatgtttacttactgtgaatctctccttttcttttctaaattactcttgtaacacttactatatatgtttttgttccttttcatgtgtatattggtttctctctctgatgaattcattggttgtttcttctcacag

Basic information

species Glycine max
transcript GLYMA03G32620.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G32620.2 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G007229_T01 (Zea mays), 5'ss of exon 5
CATCCATTGCATCCACATATACTTGCTAGTGGGAGCTTGGATCAAGAAGTTCGTTTATGGGATGCTAACACATCAGAGTGCATAATATCTCATCATTTCTgtatgtttacttactgtgaatctctccttttcttttctaaattactcttgtaacacttactatatatgtttttgttccttttcatgtgtatattggtttctctctctgatgaattcattggttgtttcttctcacag
|||||||| ||| |  | || || ||||| || || |||||||| ||||||||| ||||||||||||| || ||||| || ||    || ||  | ||| |||  ||| || |  |   |   ||    |||| |||  | | | | |||  |    |   |  |||  ||||| |  | ||   |                                                   
CATCCATTACATTCTGACATCCTGGCTAGCGGAAGTTTGGATCATGAAGTTCGTCTATGGGATGCTAATACTTCAGACTGTATTGGGTCACAAGACTTCCgtaatttttctca--gaagactgcttgcattctattcatagtcaattttgagaacaatgtaacttat--ttttgatgttcttggggcag------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208201163|gb|GD996604.1|GD996604
EST:     TCGTTTATGGGATGCTAACACATCAGAGTGCATAATATCTCATCATTTCT                         ACCGTCCCATTAGCATCTATTGCTTTTCATGCCAAAGGTGAAATAATTGCT
genomic: TCGTTTATGGGATGCTAACACATCAGAGTGCATAATATCTCATCATTTCTgtatgtttac ... cttctcacagACCGTCCCATT-GCATCTATTGCTTTTCATGCCAAAGGTGAAATAATTGCT
EST: gi|193686827|gb|FK629930.1|FK629930
EST:     TCGTTTATGGGATGCTAACACATCAGAGTGCATAATATCTCATCATTTCT                         ACCGTCCCATTGCATCTATTGCTTTTCATGCCAAAGGTGAAATAATTG
genomic: TCGTTTATGGGATGCTAACACATCAGAGTGCATAATATCTCATCATTTCTgtatgtttac ... cttctcacagACCGTCCCATTGCATCTATTGCTTTTCATGCCAAAGGTGAAATAATTG