Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAGGAAGTGGTTTGGCTCCTTGGCCTGCTCGATTGACTACTCCACCTCCTCGTCTGGCAGAAATTCACTATTCTACTGAAATGTTTGAGAAGGACATGgtaattaaattctatcttgttcaccattcctaataccttcttcattcatcagaagaaagtagcaacataagcctgctactactaactgtaacaacagaag...

Basic information

species Glycine max
transcript GLYMA03G32130.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G32130.2 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os10g33720.1 (Oryza sativa), 5'ss of exon 6
AAAAGGAAGTGGTTTGGCTCCTTGGCCTGCTCGATTGACTACTCCACCTCCTCGTCTGGCAGAAATTCACTATTCTACTGAAATGTTTGAGAAGGACATGgtaattaaattctatcttgttcac-cat-tcctaataccttcttcattcatcagaagaaagtagcaacataagcctgctactactaactgtaacaacagaag-------------------------------
    |||| |||  |||||||||||||||||||||| || ||||||||||| ||||| || ||  |  |     || |||| |  ||||| || || |  |||| |  ||  ||   | || |  ||| | ||| ||  |  |   |  || |    | |||   |||  | || ||    |  |   | ||  ||| ||                                 
TGGGGGAACTGGACTGGCTCCTTGGCCTGCTCGATTAACAACTCCACCTCCCCGTCTTGCTGATTTGTATGTCACTGCTGACACATTTGAAAAAGATACAgtaagttgatcatactatctttatacatatgctactatttattgtgtggataatttcagagt--taac-catgcttgaatgttatgtgtttagtaactgagtgcatatcgctaatcaaaaacttgctgtgcag

upper sequence: GLYMA03G32130.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv07s0005g03630.t01 (Vitis vinifera), 5'ss of exon 5
AAAAGGAAGTGGTTTGGCTCCTTGGCCTGCTCGATTGACTACTCCACCTCCTCGTCTGGCAGAAATTCACTATTCTACTGAAATGTTTGAGAAGGACATGgtaatt------aaattctatct---tgttcac-cattcctaataccttcttcattcatcagaagaaagtagcaacataagcctgctactactaactgtaacaacagaag-------------
|| ||| ||||| |||||||||||||| |||||||| ||| |||| ||||||||||| || ||  ||  |||| | | ||| |||||||| | ||| | ||||||       ||| ||| | |   | | ||  ||| | | | |  |||| |      || |   ||  |  || | |||    | |  |||   ||||  |  |||               
AAGAGGTAGTGGATTGGCTCCTTGGCCAGCTCGATTAACTGCTCCTCCTCCTCGTCTAGCTGATTTTGGCTATACCAGTGACATGTTTGAAAGGGATACGgtaatccatggcaaaatctctttgtttatgcatgcatacgtcacattttctgc-cggggcacacataaacacaaatacaaggtcacaagaacttcttgtatgattagattgatcgtgttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16105032|gb|BI892772.1|BI892772
EST:     TGTTTGAGAAGGACATG                         GAAGTTTGGAAACAACGAGTTCATAATTACTGGAGCAAGCTAGCCAGTAAG
genomic: TGTTTGAGAAGGACATGgtaattaaat ... ctttgtgtagGAAGTTTGGAAACAACGAGTTCATAATTACTGGAGCAAGCTAGCCAGTAAG
EST: gi|14011946|gb|BG726868.1|BG726868
EST:     CTCGTCTGGCAGAAATTCACTATTCTACTGAAATGTTTGAGAAGGACATG                         GAAGTTTGGAAACAACGAGTTCATAATTACTGGAGCAAGCTAGCCAGTAAG
genomic: CTCGTCTGGCAGAAATTCACTATTCTACTGAAATGTTTGAGAAGGACATGgtaattaaat ... ctttgtgtagGAAGTTTGGAAACAACGAGTTCATAATTACTGGAGCAAGCTAGCCAGTAAG
EST: gi|8825745|gb|BE209411.1|BE209411
EST:     AGAAATTCACTATTCTACTGAAATGTTTGAGAAGGACATG                         GAAGTTTGGAAACAACGAGTTCATAATTACTGGAGCAAGCTAGCCAGTAAG
genomic: AGAAATTCACTATTCTACTGAAATGTTTGAGAAGGACATGgtaattaaat ... ctttgtgtagGAAGTTTGGAAACAACGAGTTCATAATTACTGGAGCAAGCTAGCCAGTAAG