1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGGAATGATATGGATTCATCAAGAGGGGTCCTTTCGGGCACTATGGACAAATTTAAAATGgtatgtagactttttaatcatatatggcttttgaaggagtgtttgttcacagttttcctttccctttccatttgttgtcttctgcttccgttcatttttgtttgggaggaagaagaggggcagagtgcatattcatgtctgtttcaatggcttgggtctgatcttgcag
species | Glycine max |
transcript | GLYMA03G31790.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGGATTCATCAAGAGGGGTCCTTTCGGGCACTATGGACAAATTTAAAATG GTATTCGAGACCAAATCCAACCAGAGAATGTTCACGCTTGTAGCATCCTTTEST: gi|22929412|gb|BU546551.1|BU546551
genomic: TGGATTCATCAAGAGGGGTCCTTTCGGGCACTATGGACAAATTTAAAATGgtatgtagac ... gatcttgcagGTATTCGAGACCAAATCCAACCAGAGAATGTTCACGCTTGTAGCATCCTTT
EST: TGGATTCATCAAGAGGGGTCCTTTCGGGCACTATGGACAAATTTAAAATG GTATTCGAGACCAAATCCAACCAGAGAATGTTCACGCTTGTAGCATCCTTTEST: gi|7693452|gb|AW761544.1|AW761544
genomic: TGGATTCATCAAGAGGGGTCCTTTCGGGCACTATGGACAAATTTAAAATGgtatgtagac ... gatcttgcagGTATTCGAGACCAAATCCAACCAGAGAATGTTCACGCTTGTAGCATCCTTT
EST: TGGATTCATCAAGAGGGGTCCTTTCGGGCACTATGGACAAATTTAAAATG GTATTCGAGACCAAATCCAACCAGAGAATGTTCACGCTTGTAGCATCCTTTEST: gi|208289260|gb|GE084965.1|GE084965
genomic: TGGATTCATCAAGAGGGGTCCTTTCGGGCACTATGGACAAATTTAAAATGgtatgtagac ... gatcttgcagGTATTCGAGACCAAATCCAACCAGAGAATGTTCACGCTTGTAGCATCCTTT
EST: TGGATTCATCAAGAGGGGTCCTTTCGGGCACTATGGACAAATTTAAAATG GTATTCGAGACCAAATCCAEST: gi|7286192|gb|AW598679.1|AW598679
genomic: TGGATTCATCAAGAGGGGTCCTTTCGGGCACTATGGACAAATTTAAAATGgtatgtagac ... gatcttgcagGTATTCGAGACCAAATCCA
EST: TGGATTCATCAAGAGGGGTCCTTTCGGGCACTATGGACAAATTTAAAATG GTATTCGAGACCAAATCCAACCAGAGAATGTTCACGCTTGTAGCATCCTTTEST: gi|17963404|gb|BM270153.1|BM270153
genomic: TGGATTCATCAAGAGGGGTCCTTTCGGGCACTATGGACAAATTTAAAATGgtatgtagac ... gatcttgcagGTATTCGAGACCAAATCCAACCAGAGAATGTTCACGCTTGTAGCATCCTTT
EST: TGGATTCATCAAGAGGGGTCCTTTCGGGCACTATGGACAAATTTAAAATG GTATTCGAGACCAAATCCAACCAGAGAATGTTCACGCTTGTAGCATCCTTT
genomic: TGGATTCATCAAGAGGGGTCCTTTCGGGCACTATGGACAAATTTAAAATGgtatgtagac ... gatcttgcagGTATTCGAGACCAAATCCAACCAGAGAATGTTCACGCTTGTAGCATCCTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGAATGATATGGATTCATCAAGAGGGGTCCTTTCGGGCACTATGGACAAATTTAAAATGgtatgtagactttttaatcatatatggcttttgaaggagtgtttgttcacagttttcctttccctttccatttgttgtcttctgcttccgttcatttttgtttgggaggaagaagaggggcagagtgcatattcatgtctgtttcaatggcttgggtctgatcttgcag
- - - - - - - - - - AAGAGG