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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTGAGCATGAGTAGACTGGGTGGAGCCGGTGCAGTGGCACCACTGGTAACTGACATTCCATTATCATCAGTCGAGgtgattattgagaagaaatagttgttgaaagaattttattatttttaatatctttgacttccaagtgatttaacaaattcagtggtgatcag

Basic information

species Glycine max
transcript GLYMA03G31510.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G31510.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv07s0141g00220.t01 (Vitis vinifera), 5'ss of exon 5
GTTTTGAGCATGAGTAGACTGGGTGGAGCCGGTGCAGTGGCACCACTGGTAACTGACATTCCATTATCATCAGTCGAGgtgattattgagaagaaatagttgttgaaagaattttattatttttaatatctttgacttccaagtgatttaacaaattcagtggtgatcag-
|| ||||||||||||||| |||| ||||| |||||||| |||||||| ||||| |||||||||||| ||||||||||||| || |   | |||||    |        |   |||| |  |    || ||||| | ||  | ||   ||      ||| |   |  | |  
GTCTTGAGCATGAGTAGATTGGGCGGAGCTGGTGCAGTTGCACCACTTGTAACAGACATTCCATTAGCATCAGTCGAGgtaatcaacaacaagaagatatataaacttgccatttaattctccccatgtctttaa-ttgtaggtttctttcttttttctgctttttttaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193431218|gb|FK398602.1|FK398602
EST:     CCGGTGCAGTGGCACCACTGGTAACTGACATCCCATTATCATCAGTCGAG                         GAAGAAGGTGGTGAAGGTGCGCGAAACCGGCCAGCATGGGACAAGTG
genomic: CCGGTGCAGTGGCACCACTGGTAACTGACATTCCATTATCATCAGTCGAGgtgattattg ... tggtgatcagGAAGAAGGTGGTGAAGGTGCGCGAAACCGGCCAGCTTGGGACAAGTG