1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AATGTTCATTCAATTCAATCCCAAGGCTTGCAAACATTTCAGGTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGAgtaagcagccattagatcacaattttgttttgctagcactgaaccagccataaacaattataaataacttgtgctctaaaattctgcag
species | Glycine max |
transcript | GLYMA03G31340.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGA ATGTTGTGCTAGATATATGCACGGATTTACCAGCATGGCCAGGAAGACATCEST: gi|193310198|gb|FK274080.1|FK274080
genomic: GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGAgtaagcagcc ... aattctgcagATGTTGTGCTAGATATATGCACGGATTTACCAGCATGGCCAGGAAGACATC
EST: AAAAGAAAAAGA ATGTTGTGCTAGATATATGCACGGATTTACCAGCATGGCCAGGAAGACATCEST: gi|208333430|gb|GE126195.1|GE126195
genomic: AAAAGAAAAAGAgtaagcagcc ... aattctgcagATGTTGTGCTAGATATATGCACGGATTTACCAGCATGGCCAGGAAGACATC
EST: GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGA ATGTTATGCTAGATATATGCACGGATTTACCAGCATGGCCAGGAAGACATCEST: gi|193493966|gb|FK461822.1|FK461822
genomic: GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGAgtaagcagcc ... aattctgcagATGTTGTGCTAGATATATGCACGGATTTACCAGCATGGCCAGGAAGACATC
EST: GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGA ATGTTGTGCTAGATATATGCACGGATTTACCAGCATGGCCAGGAAGACATCEST: gi|208284148|gb|GE088168.1|GE088168
genomic: GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGAgtaagcagcc ... aattctgcagATGTTGTGCTAGATATATGCACGGATTTACCAGCATGGCCAGGAAGACATC
EST: GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGA ATGTTGTGCTAGATATATGCACGGATTTACCAGCATGGCCGGGAAGACATCEST: gi|208240225|gb|GE042335.1|GE042335
genomic: GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGAgtaagcagcc ... aattctgcagATGTTGTGCTAGATATATGCACGGATTTACCAGCATGGCCAGGAAGACATC
EST: GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGA ATGTTGTGCTAGATATATGCACGGATTTACCAGCATGGCCAGGAAGACATCEST: gi|208276076|gb|GE074314.1|GE074314
genomic: GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGAgtaagcagcc ... aattctgcagATGTTGTGCTAGATATATGCACGGATTTACCAGCATGGCCAGGAAGACATC
EST: CAAAAAGAAAAAGA ATGTTGTGCTAGATATATGCACGGATTTACCAGCATG
genomic: CAAAAAGAAAAAGAgtaagcagcc ... aattctgcagATGTTGTGCTAGATATATGCACGGATTTACCAGCATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATGTTCATTCAATTCAATCCCAAGGCTTGCAAACATTTCAGGTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGAgtaagcagccattagatcacaattttgttttgctagcactgaaccagccataaacaattataaataacttgtgctctaaaattctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA