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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCGGTGAGGTTGTTGCTGTTACTGGCGATGGAACTAATGATGCCCCTGCACTGCGTGAGGCAGACATTGGACTTGCAATGGGCATAGCAGGAACTGAGgtttgtatctcttgtgtactattatgataattctgacagttacgagttgttttagttttgttaattctcctgcattatgttttaagatataaggtgttat...

Basic information

species Glycine max
transcript GLYMA03G29010.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G29010.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os05g41580.1 (Oryza sativa), 5'ss of exon 4
GTTCGGTGAGGTTGTTGCTGTTACTGGCGATGGAACTAATGATGCCCCTGCACTGCGTGAGGCAGACATTGGACTTGCAATGGGCATAGCAGGAACTGAGgtttgtatctcttgtgtactattatgataattctgacagttacgagttgttttagttttgttaattctcctgcattatgttttaagatataaggtgttat
||     ||||||||||| || ||||| |||||||| ||||||||||| |||||||  ||| |||| |||||||| |||||||| ||  | ||||||||||| | |||   |  | | |  | ||     || |   | |      |    ||| | |  |   ||     |  |  ||   | |||  |  |   |   
GTATCAAGAGGTTGTTGCGGTGACTGGTGATGGAACCAATGATGCCCCAGCACTGCACGAGTCAGATATTGGACTAGCAATGGGTATCACTGGAACTGAGgtatctatgaatgtttttcggtaatttatgttgttttattcctctatgaccttaatatgttcggtttgagcgtgtcttgaagtgagaactgggaaatgcc

upper sequence: GLYMA03G29010.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G104730_T02 (Zea mays), 5'ss of exon 5
GTTCGGTGAGGTTGTTGCTGTTACTGGCGATGGAACTAATGATGCCCCTGCACTGCGTGAGGCAGACATTGGACTTGCAATGGGCATAGCAGGAACTGAGgt-----ttgtatctcttgtgtactattatgataattctgacagttacgagttgttttagttttgttaattctcctgcatta--tgttttaagatataaggt-gttat-----------------------------------------------------------------
|||| | ||||| |||||||| || |||||||| || ||||| || || ||| ||| ||| ||||| ||||| ||||||||||||||||||||||| |||||      | || |||     | ||| | |  | | | |||  || |  |  | ||  |      | |        | | |      ||  |  |  ||||   | ||                                                                 
GTTCAGGGAGGTGGTTGCTGTGACAGGCGATGGTACCAATGACGCTCCAGCATTGCATGAAGCAGATATTGGGCTTGCAATGGGCATAGCAGGAACAGAGgtactaactatacctcgcaatttctactgttcttactgtgaatgtaaaaacctcttgcaaggccatcagaagctaagaactcctcacttgcaattgcaaggccatcatgcccttcggcaattctgtgcgtcccttgaaaagataaataacagtataagcttacatacttgcag

upper sequence: GLYMA03G29010.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G305159_T02 (Zea mays), 5'ss of exon 5
GTTCGGTGAGGTTGTTGCTGTTACTGGCGATGGAACTAATGATGCCCCTGCACTGCGTGAGGCAGACATTGGACTTGCAATGGGCATAGCAGGAACTGAGgtttgtatct---cttgtgtac-tattatgataattctgacagttacgagttgttttagttttgttaattctcctgcattatgttttaagatataaggtgttat
||     ||||| || || |||||||| |||||||| ||||||||||| ||| || ||||| ||||||| || || || ||||| || || || |||||||| ||| |      || | | | |    ||   | ||   | | | | |   | || | |  ||  ||    | | |||    | |  || | | ||   ||  
GTATCAAGAGGTGGTGGCAGTTACTGGTGATGGAACCAATGATGCCCCAGCATTGAGTGAGTCAGACATAGGTCTGGCCATGGGAATTGCCGGCACTGAGgtatgtcttcgagtttctatgcctgccttgcgtactccctctgattccaaaggattca-tcatggaaaaatactttcatagcatat--agctttgagtaattc-

upper sequence: GLYMA03G29010.1 (Glycine max), 5'ss of exon 5
lower sequence: AT2G41560.1 (Arabidopsis thaliana), 5'ss of exon 4
GTTCGGTGAGGTTGTTGCTGTTACTGGCGATGGAACTAATGATGCCCCTGCACTGCGTGAGGCAGACATTGGACTTGCAATGGGCATAGCAGGAACTGAGgtttgtatctcttgtgtactattatgataattctgacagttacgagttgttttagttttgttaattctcctgcattatgttttaagatataaggtgttat
  | || ||||| ||||| || || || ||||| || || |||||||||||  ||| |||||||||||||||||| |||||||| ||||| ||||| |||||  |      || |   || ||||  |  ||  |  | | |  |    | |     ||   | ||    |   |  |  ||   |||||   |      
AATTGGAGAGGTAGTTGCAGTGACAGGGGATGGGACAAACGATGCCCCTGCGTTGCATGAGGCAGACATTGGACTAGCAATGGGAATAGCTGGAACAGAGgtaagctatagttattctctgttat--tggtttggttaataaaaaa--atctcgagattaacattttcgtttggtgctaattcccgatatgcag------

upper sequence: GLYMA03G29010.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G57330.1 (Arabidopsis thaliana), 5'ss of exon 4
GTTCGGTGAGGTTGTTGCTGTTACTGGCGATGGAACTAATGATGCCCCTGCACTGCGTGAGGCAGACATTGGACTTGCAATGGGCATAGCAGGAACTGAGgt---ttgtatctcttgtgtactattatgataattctgacagttacgagttgttttagttt-tgttaatt-ctcctgcattatgttttaagatataaggtgttat
  | || ||||| ||||| || ||||| |||||||| |||||||| |||||| ||| |||||| |||||||||||||| ||||| ||||| ||||| |||||    | |   |||  | |  || |    | |||    || |    | | | | |  | | ||||||   |||| || |     |  || | | |         
AATGGGAGAGGTAGTTGCAGTGACTGGGGATGGAACAAATGATGCTCCTGCATTGCATGAGGCTGACATTGGACTTGCCATGGGAATAGCTGGAACAGAGgtagcctttggttctcctctgttactg-agttattaaatcattgtaaaatcgatgttctctatgttaaaaactcccgcgta----tacaacacacag--------

upper sequence: GLYMA03G29010.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv08s0007g08960.t01 (Vitis vinifera), 5'ss of exon 4
GTTCGGTGAGGTTGTTGCTGTTACTGGCGATGGAACTAATGATGCCCCTGCACTGCGTGAGGCAGACATTGGACTTGCAATGGGCATAGCAGGAACTGAGgtttgtatctcttgtgtactattatgataattctgacagttacgagttgttttagttttgttaattctcctgcattatgttttaagatataaggtgttat--
||  |||||||||||||| || || || ||||| || |||||||| || ||  ||| |||||| |||||||| ||||| ||||||||||| ||||| ||||||||  | ||       ||  | |  || |  |  | |||   | |    |||  | |  |  |||| ||   ||      | |  | | || | ||    
GTATGGTGAGGTTGTTGCAGTGACAGGTGATGGGACAAATGATGCACCAGCTTTGCATGAGGCTGACATTGGGCTTGCCATGGGCATAGCTGGAACAGAGgtttgcttatccgaccatcttatgtactagtcat--ctgtttttactgcccttatctgttgtctttcttcttggttgcacagttattttttagttttttgat

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192300347|gb|FG991449.1|FG991449
EST:     CACTGCGTGAGGCAGACATTGGACTTGCAATGGGCATAGCAGGAACTGAG                         GTCGCTAAAGAAAATGCTGATGTCATTATAATGGATGATAACTTCACGACT
genomic: CACTGCGTGAGGCAGACATTGGACTTGCAATGGGCATAGCAGGAACTGAGgtttgtatct ... tcatttacagGTCGCTAAAGAAAATGCTGATGTCATTATAATGGATGATAACTTCACGACT