1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AGGTACACTGCAATCAATTGCAGTTACCTTTGTCATGGAGCACAAACCATCTGTTTGGACCATTGGCTGGGACATGAACCTTCTTGCTGCAGCCTATGCTgtaagccactctctctctatttgtctatccatctatgatctatctgataaattattatatggtctaagatcatctgattccaattaatttttaagtaaca...
species | Glycine max |
transcript | GLYMA03G27760.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTGTTTGGACCATTGGCTGGGACATGAACCTTCTTGCTGCAGCCTATGCT GGAATAATATCATCAGGTATCACCTACTATGTTCAAGGGATTGTCATGCAGEST: gi|6455237|gb|AW185920.1|AW185920
genomic: CTGTTTGGACCATTGGCTGGGACATGAACCTTCTTGCTGCAGCCTATGCTgtaagccact ... ggtgaaccagGGAATAATATCATCAGGTATCACCTACTATGTTCAAGGGATTGTCATGCAG
EST: CTGTTTGGACCATTGGCTGGGACATGAACCTTCTTGCTGCAGCCTATGCT GGAATAATATCATCAGGTATCACCTACTATGTTCAAGGGATTGTCATGCAGEST: gi|298199289|gb|HO042652.1|HO042652
genomic: CTGTTTGGACCATTGGCTGGGACATGAACCTTCTTGCTGCAGCCTATGCTgtaagccact ... ggtgaaccagGGAATAATATCATCAGGTATCACCTACTATGTTCAAGGGATTGTCATGCAG
EST: CTGTTTGGACCATTGGCTGGGACATGAACCTTCTTGCTGCAGCCTATGCT GGAATAATATCATCAGGTATCACCTACTATGTTCAAGGGATTGTCATGCAGEST: gi|151396846|gb|EV266719.1|EV266719
genomic: CTGTTTGGACCATTGGCTGGGACATGAACCTTCTTGCTGCAGCCTATGCTgtaagccact ... ggtgaaccagGGAATAATATCATCAGGTATCACCTACTATGTTCAAGGGATTGTCATGCAG
EST: CTGTTTGGACCATTGGCTGGGACATGAACCTTCTTGCTGCAGCCTATGCT GGAATAATATCATCAGGTATCACCTACTATGTTCAAGGGATTGTCATGCAG
genomic: CTGTTTGGACCATTGGCTGGGACATGAACCTTCTTGCTGCAGCCTATGCTgtaagccact ... ggtgaaccagGGAATAATATCATCAGGTATCACCTACTATGTTCAAGGGATTGTCATGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGTACACTGCAATCAATTGCAGTTACCTTTGTCATGGAGCACAAACCATCTGTTTGGACCATTGGCTGGGACATGAACCTTCTTGCTGCAGCCTATGCTgtaagccactctctctctatttgtctatccatctatgatctatctgataaattattatatggtctaagatcatctgattccaattaatttttaagtaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctc