Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAGCTACTAATCACTATTCAAGTCTTCAAATAACCACAACAAGACATGGGAGTTACTTGTTAGACCAAGTGTCAGTTATGCCATTGGACACTTACATGgttagtagaatagcaaacacacattacaaatcaacaaatgtagcaattaaatttagcgagattctttagatcaataatgatagagtaactctaatacaaa...

Basic information

species Glycine max
transcript GLYMA03G27470.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G27470.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G097277_T01 (Zea mays), 5'ss of exon 5
AAAAGCTACTAATCACTATTCAAGTCTTCAAATAACCACAACAAGACATGGGAGTTACTTGTTAGACCAAGTGTCAGTTATGCCATTGGACACTTACATGgt----tagtagaatagcaaacacacattacaaatcaacaaat-----gtagcaattaaatttagcgagattctttagatcaataat-gatagagtaactctaatacaaa-------------------------------------------------------------------------------------
 ||    | |||   | | |||||  ||||| | || ||||  | |   |||      | | | || ||||| |||||||||||| ||||||||||||||||    || ||| ||  ||        ||     |   | | |     || ||| |||| | |  |  | |   ||| |    ||||  ||  | |    |  || |||                                                                                      
CAACCAAAATAACAGCAACTCAAGGTTTCAACTTACAACAAGTAAAAGCGGGGTAGTTTGGCTTGATCAAGTATCAGTTATGCCAATGGACACTTACATGgtatactactagcatc-cagttctgttttttgctttctctattttctagtggcacttaattctgaccggttggattaaaatgttaattaattaattgctgccgatccaactatacagttaaagtttattttactcgaatgtagttgtccagggatggtctgactatgacttttattcattaccacatgtctttag