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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGGATGCAAAGGCACTGGTATGAAAATTACAAGAAGGCAGATTGGACTAGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaaactttattttccatattttgtttggttgctttatgatgtttcctccagctcacctttcattgatgcag

Basic information

species Glycine max
transcript GLYMA03G27030.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G27030.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os04g46390.3 (Oryza sativa), 5'ss of exon 5
TTTGGATGCAAAGGCACTGGTATGAAAATTACAAGAAGGCAGATTGGACTAGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgt----aatggaaactttattttccatattttgtttggttgctttatgatgtttcctccagctcacctttcattgatgcag-------------------------------
| ||| ||  | ||    || ||||  | || ||   | ||||| |||||||||||||||||||| |||||   |||||||||||| ||||||||||| |||    ||  |   ||  | |||  ||  | | | | | |||   ||  || || ||   |  |    || ||   || |                                
TATGGTTGTCATGGTGTAGGAATGAGGAATATAATGCGACAGATAGGACTAGGCATGATTCAACATATGCAGACTGTCTGTCCTGAATGCAGAGGATCAGgtatgcaacagttgctccaatttttatgctatatcttgctgcaaaattgtgatttcttaggagcctgctttatgtttgtaatgttctatacttgatcaggtgagatcataag

upper sequence: GLYMA03G27030.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os04g46390.1 (Oryza sativa), 5'ss of exon 5
TTTGGATGCAAAGGCACTGGTATGAAAATTACAAGAAGGCAGATTGGACTAGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgta----atggaaactttattttccatattttgtttggttgctttatgatgtttcctccagctcacctttcattgatgcag------------------
| ||| ||  | ||    || ||||  | || ||   | ||||| |||||||||||||||||||| |||||   |||||||||||| ||||||||||| ||||    |  |   ||  | |||  ||  | | | | | |||   ||  || || ||   |  |    || ||   || |                   
TATGGTTGTCATGGTGTAGGAATGAGGAATATAATGCGACAGATAGGACTAGGCATGATTCAACATATGCAGACTGTCTGTCCTGAATGCAGAGGATCAGgtatgcaacagttgctccaatttttatgctatatcttgctgcaaaattgtgatttcttaggagcctgctttatgtttgtaatgttctatacttgatcag

upper sequence: GLYMA03G27030.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv15s0021g02090.t01 (Vitis vinifera), 5'ss of exon 5
TTTGGATGCAAAGGCACTGGTATGAAAATTACAAGAAGGCAGATTGGACTAGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaat-----ggaaactttattttccatattttgtttggttgctttatgatgtttcctccagctc------acctttcattgatgcag------------------
| ||| ||| ||||  | || ||||| |||||||   | ||||||| || |||||||||||||||||||||||||||||||| ||| |||||||| || ||||||     | || || | |||     || || |||| ||     ||  | ||||||  |  |       |  ||| ||   || |                   
TATGGCTGCCAAGGTTCAGGAATGAAGATTACAACCCGACAGATTGCACCAGGCATGATTCAACAAATGCAACATGTCTGTCATGAATGCAGAGGGTCAGgtaattaactgaaacctatttttgtttcatgttttttgtttttcaaattttttttccttaattttttcaaaattttttatgcctgtatcttatttggttgattcag

upper sequence: GLYMA03G27030.1 (Glycine max), 5'ss of exon 5
lower sequence: PP1S100_36V6.1 (Physcomitrella patens), 5'ss of exon 4
TTTGGATGCAAAGGCACTGGTATGAAAATTACAAGAAGGCAGATTGGACTAGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaaactttattttccatattttgtt--tggttgcttta-tg-atgtttcctccagctcacctttcattgatgcag------------------------------------------
   |||||  ||||  | || |||||  || |||   | ||| | || |    |||||| || || ||||||||||| ||||||||||||| ||||||||||||   |    |  |||    |   |||    | ||||||  | || |||||   | |   |  |  ||| | | ||                                             
GCAGGATGTCAAGGTTCAGGCATGAAGGTTTCAATCCGTCAGCTGGGTCCTAACATGATACAGCAGATGCAACATGTGTGTCCTGACTGCAAAGGATCTGgtaactaatgtgtcctttgatgtcaattgacaatagttgctgaagtgtatgttcaattcgcttggctgttcgtggttgttctcttcaatttacgtactgctaattttggaaatacttttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26045969|gb|CA783365.1|CA783365
EST:     AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG                         GTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaaa ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
EST: gi|21678081|gb|BQ630432.1|BQ630432
EST:     AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG                         GTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaaa ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
EST: gi|7588764|gb|AW704552.1|AW704552
EST:     AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG                         GTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaaa ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
EST: gi|26058056|gb|CA800970.1|CA800970
EST:     AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG                         GTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaaa ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
EST: gi|254323522|gb|GR835968.1|GR835968
EST:     AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG                         GTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaaa ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
EST: gi|9819348|gb|BE554861.1|BE554861
EST:     AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG                         GTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaaa ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
EST: gi|254335361|gb|GR846858.1|GR846858
EST:     AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG                         GTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAA
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaaa ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAA
EST: gi|19345767|gb|BM890647.1|BM890647
EST:     AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG                         GTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaaa ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
EST: gi|19452608|gb|BM954018.1|BM954018
EST:     AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG                         GTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaaa ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
EST: gi|208179723|gb|GD973642.1|GD973642
EST:     TCTGTCCTGACTGCAGAGGATCTG                         GTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
genomic: TCTGTCCTGACTGCAGAGGATCTGgtaatggaaa ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
EST: gi|207709946|gb|GD690630.1|GD690630
EST:     ACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG                         GTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
genomic: ACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaaa ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
EST: gi|58017394|gb|CX704136.1|CX704136
EST:     GGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG                         GTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
genomic: GGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaaa ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
EST: gi|42722495|gb|CK768394.1|CK768394
EST:     AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG                         GTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGNCAA-GGAAACAAG
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaaa ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTG-CAAAGGAAACAAG
EST: gi|254331143|gb|GR843262.1|GR843262
EST:     AG-CATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG                         GTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaaa ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
EST: gi|254348976|gb|GR860248.1|GR860248
EST:     AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG                         GTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaaa ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
EST: gi|19347132|gb|BM892012.1|BM892012
EST:     AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG                         GTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaaa ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
EST: gi|193715624|gb|FK654191.1|FK654191
EST:     AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG                         GTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaaa ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
EST: gi|19453462|gb|BM954872.1|BM954872
EST:     AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG                         GTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaaa ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
EST: gi|42722880|gb|CK768779.1|CK768779
EST:     CAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG                         GTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
genomic: CAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaaa ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
EST: gi|207699602|gb|GD678901.1|GD678901
EST:     AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG                         GTGAGGTCATTAAC
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaaa ... attgatgcagGTGAGGTCATTAAC
EST: gi|19346989|gb|BM891869.1|BM891869
EST:     TTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG                         GTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
genomic: TTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaaa ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
EST: gi|10843388|gb|BF066687.1|BF066687
EST:     AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG                         GTGAGGTCATTAACGACAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaaa ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
EST: gi|193524222|gb|FK480525.1|FK480525
EST:     AAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG                         GTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
genomic: AAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaaa ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
EST: gi|254344879|gb|GR851362.1|GR851362
EST:     AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG                         GTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaaa ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
EST: gi|24137042|gb|BU927552.1|BU927552
EST:     AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG                         GTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaaa ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
EST: gi|16106237|gb|BI893977.1|BI893977
EST:     AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG                         GTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaaa ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
EST: gi|208304258|gb|GE103093.1|GE103093
EST:     AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG                         GTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaaa ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
EST: gi|254347759|gb|GR854008.1|GR854008
EST:     AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG                         GTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaaa ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
EST: gi|19936712|gb|BQ080984.1|BQ080984
EST:     AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG                         GTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaaa ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
EST: gi|7589228|gb|AW705006.1|AW705006
EST:     AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG                         GTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaaa ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
EST: gi|7588445|gb|AW704302.1|AW704302
EST:     AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG                         GTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaaa ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
EST: gi|254321258|gb|GR827707.1|GR827707
EST:     AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG                         GTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaaa ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
EST: gi|27808946|gb|CB063368.1|CB063368
EST:     ATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG                         GTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
genomic: ATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaaa ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
EST: gi|208256401|gb|GE053198.1|GE053198
EST:     AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG                         GTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaaa ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
EST: gi|18692770|gb|BM521618.1|BM521618
EST:     AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG                         GTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaaa ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
EST: gi|254317647|gb|GR826631.1|GR826631
EST:     AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG                         GTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaaa ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
EST: gi|19452755|gb|BM954165.1|BM954165
EST:     AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG                         GTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaaa ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
EST: gi|254319441|gb|GR830692.1|GR830692
EST:     AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG                         GTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaaa ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
EST: gi|254328558|gb|GR832930.1|GR832930
EST:     AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG                         GTGAGGTCATTAACGAGAGAGATAAATGTC-TCTGTGCAAAG
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaaa ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAG
EST: gi|17964558|gb|BM271291.1|BM271291
EST:     AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG                         GTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaaa ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTTGGATGCAAAGGCACTGGTATGAAAATTACAAGAAGGCAGATTGGACTAGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaaactttattttccatattttgtttggttgctttatgatgtttcctccagctcacctttcattgatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT