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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACTATATTGGCTATAATGAATCTGGCCGTCGTATTGACAGCACTTATTTGCAGGGTACTCCAGCCAAAATCCGTATGGGCACCAAGGGATTGGTTCCAGgttaaaattttaagatttagtactatcaatatccttgcaactttataagaaaagtattcatcctttgcttgatttctgtctctcccttaaagaaaccaaaaggggaggaaataagtgcagaaagaaatgataaaagtacatttttcttatgcag

Basic information

species Glycine max
transcript GLYMA03G26680.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G26680.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv15s0021g01850.t01 (Vitis vinifera), 5'ss of exon 10
CACTATATTGGCTATAATGAATCTGGCCGTCGTATTGACAGCACTTATTTGCAGGGTACTCCAGCCAAAATCCGTATGGGCACCAAGGGATTGGTTCCAGgttaaaatt--ttaagatttagtactatcaatatccttgcaactttataagaaaagtattcatcctttgcttgatttctgtctctcccttaaagaaaccaaaaggggaggaaataagtgcagaaagaaatgataaaagtacatttttcttatgcag
|||||| ||||||||||||| || || || ||||||||||||| |||| |||||||| |||| ||||||||||| ||||||||||| | | | ||||| ||| || ||   |||  || |    || |   | || |||  | |   ||| | |||||||  ||| |  |   |  |          |    || | |  |||    ||  |||  ||||||                                  
CACTATGTTGGCTATAATGAGTCAGGTCGCCGTATTGACAGCAGTTATATGCAGGGTTCTCCTGCCAAAATCCGGATGGGCACCAATGCACTAGTTCCTGgtaaatatgaattacaatattcgtctgt-gctttctttgttaata-gtaatagaagtattt-tccataacccaacataaagtaaaagcggttagtagctgaaac---agtgaatttgtgcag----------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6482353|gb|AW201619.1|AW201619
EST:     GCAGGGTACTCCAGCCAAAATCCGTATGGGCACCAAGGGATTGGTTCCAG                         GATTTGAGGAAGGAATTAGAGACATGAGACCAGGTGGGAAGAGAAGAATCA
genomic: GCAGGGTACTCCAGCCAAAATCCGTATGGGCACCAAGGGATTGGTTCCAGgttaaaattt ... tcttatgcagGATTTGAGGAAGGAATTAGAGACATGAGACCAGGTGGGAAGAGAAGAATCA
EST: gi|193731536|gb|FK667462.1|FK667462
EST:     GCCAAAATCCGTATGGGCACCAAGGGATTGGTTCCAG                         GATTTGAGGAAGGAATTAGAGACATGAGACCAGGTGGGAAGAGAAGAATCA
genomic: GCCAAAATCCGTATGGGCACCAAGGGATTGGTTCCAGgttaaaattt ... tcttatgcagGATTTGAGGAAGGAATTAGAGACATGAGACCAGGTGGGAAGAGAAGAATCA
EST: gi|151393177|gb|EV263052.1|EV263052
EST:     GCAGGGTACTCCAGCCAAAATCCGTATGGGCACCAAGGGATTGGTTCCAG                         GATTTGAGGAAGGAATTAGAGACATGAGACCAGGTGGGAAGAGAAGAATCA
genomic: GCAGGGTACTCCAGCCAAAATCCGTATGGGCACCAAGGGATTGGTTCCAGgttaaaattt ... tcttatgcagGATTTGAGGAAGGAATTAGAGACATGAGACCAGGTGGGAAGAGAAGAATCA
EST: gi|213589871|gb|DB959454.1|DB959454
EST:     GCAGGGTACTCCAGCCAAAATCCGTATGGGCACCAAGGGATTGGTTCCAG                         GATTTGAGGAAGGAATTAGAGACATGAGACCAGGTGGGAAGAGAAGAATCA
genomic: GCAGGGTACTCCAGCCAAAATCCGTATGGGCACCAAGGGATTGGTTCCAGgttaaaattt ... tcttatgcagGATTTGAGGAAGGAATTAGAGACATGAGACCAGGTGGGAAGAGAAGAATCA
EST: gi|14011350|gb|BG726272.1|BG726272
EST:     CAGGGTACTCCAGCCAAAATCCGTATGGGCACCAAAGGGATTGGTTCCAG                         GATTTGAGGAAGGAATTAGAGACATGAGACCAGGTGGGAAGAGAAGAATCA
genomic: CAGGGTACTCCAGCCAAAATCCGTATGGGCACCAA-GGGATTGGTTCCAGgttaaaattt ... tcttatgcagGATTTGAGGAAGGAATTAGAGACATGAGACCAGGTGGGAAGAGAAGAATCA