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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTGGTGGTGTTGCCAGAGCACGTGCTTTTGCCAAAAAATTATCTGATGCTCCTTTAGCTATTGTTGATAAAAGGCGCCATGGGCATAATGTTGCTGAGgtatgattcttcgtaagtttgagtttagacgtctcaattataatggttcagattcaattactcaaaataagactcttggttgtatgaaattgaaatatac...

Basic information

species Glycine max
transcript GLYMA03G24280.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G24280.2 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os02g03540.1 (Oryza sativa), 5'ss of exon 5
TGTTGGTGGTGTTGCCAGAGCACGTGCTTTTGCCAAAAAATTATCTGATGCTCCTTTAGCTATTGTTGATAAAAGGCGCCATGGGCATAATGTTGCTGAGgtatgattcttcgtaagtttgagtttagacgtctcaattataatggttca--gattcaattactcaaaataagactcttggttgtatgaaattgaaatatac
|||||| ||||||||||| ||||||||||||||||||||  |||| ||||| ||| |||| ||||||||||||||  | ||||| || |||||||| |||| | | |    | |   ||||  ||  |   | |  |  ||||   || |   || ||| ||   |||||||     || ||| || |   ||   || | |
TGTTGGAGGTGTTGCCAGGGCACGTGCTTTTGCCAAAAAGCTATCAGATGCACCTCTAGCAATTGTTGATAAAAGAAGGCATGGACACAATGTTGCCGAGgcaag-tagagcattc-tttgctttctggtttatacaggataaacatttatgaatgcaagtaggaaaaataacttagttcgttctaagttcttctgatcttc

upper sequence: GLYMA03G24280.2 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G038791_T01 (Zea mays), 5'ss of exon 5
TGTTGGTGGTGTTGCCAGAGCACGTGCTTTTGCCAAAAAATTATCTGATGCTCCTTTAGCTATTGTTGATAAAAGGCGCCATGGGCATAATGTTGCTGAGgtatgattcttcgtaagtttgagtttagacgtctcaattataatggttcagattcaattactcaaaataagactcttggttgtatgaaattgaaatatac----
|||||| ||||||||||| |||||||| |||||||||||  | || ||||| ||| |||||||||| ||||||||  | || || |||||||| ||||||| | |  |  | |||   |    |||   | |    | | ||      || ||  |  ||   | || || | | |    |  ||  |  | ||||||      
TGTTGGAGGTGTTGCCAGGGCACGTGCCTTTGCCAAAAAGCTGTCAGATGCACCTCTAGCTATTGTAGATAAAAGAAGGCAAGGACATAATGTCGCTGAGgcaagtattcttgtactatgttatttg--cttaaacagtgtagccagccaaatggatgtatatagaagaaaaatatcaacttcat--agcttaaatattagttt

upper sequence: GLYMA03G24280.2 (Glycine max), 5'ss of exon 5
lower sequence: AT2G44530.2 (Arabidopsis thaliana), 5'ss of exon 5
TGTTGGTGGTGTTGCCAGAGCACGTGCTTTTGCCAAAAAATTATCTGATGCTCCTTTAGCTATTGTTGATAAAAGGCGCCATGGGCATAATGTTGCTGAGgtatgat--tcttcgtaagtttgagtttagac--gtctcaattataatggttcagattcaattactcaaaataagactcttggttgtatgaaattgaaatatac
||||||||| || || ||||| || |||||||| || || ||||||||||| |||||||| || ||||||||||| || |||||||| |||||||| ||||||  |    ||| | ||  |  | ||||  |  ||||  ||| | |   || | |  |  || |    |                                  
TGTTGGTGGCGTCGCAAGAGCTCGCGCTTTTGCGAAGAAGTTATCTGATGCACCTTTAGCAATAGTTGATAAAAGACGTCATGGGCACAATGTTGCAGAGgtagaaaaacctttggaaaatacattttaaccaagtctggattttgacatttaacaacccgtttcatgtag---------------------------------

upper sequence: GLYMA03G24280.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv15s0021g00460.t01 (Vitis vinifera), 5'ss of exon 5
TGTTGGTGGTGTTGCCAGAGCACGTGCTTTTGCCAAAAAATTATCTGATGCTCCTTTAGCTATTGTTGATAAAAGGCGCCATGGGCATAATGTTGCTGAGgtatgattcttcgtaagtttgagtttagacgtc-tcaattataatggttcagattc-aattactcaa-aataagactcttggttgtatgaaattgaaatatac
||||||||| ||||| ||||| |||||||||||||||||||| || ||||| ||| |||| ||||| |||||||||||||||||||| |||||||| ||||||  |    |   ||     | | ||    |  |  |  ||| ||||  | |  | | ||  |     ||       |   |  | |    ||   | ||  
TGTTGGTGGAGTTGCTAGAGCGCGTGCTTTTGCCAAAAAATTGTCAGATGCACCTCTAGCCATTGTGGATAAAAGGCGCCATGGGCACAATGTTGCAGAGgtaacacatatttgaa---caaatctaacaatggtttacaatattggtaaaaagcctagttgtttgttgatttcttcatccttcattttggcttattacatct

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208114373|gb|GD908484.1|GD908484
EST:     CTCCTTTAGCTATTGTTGATAAAAGGCGCCATGGGCATAATGTTGCTGAG                         GTGATGAATTTGATTGGTGATGTAAGGGGAAAGGTAGCAGTTATGGTTGAT
genomic: CTCCTTTAGCTATTGTTGATAAAAGGCGCCATGGGCATAATGTTGCTGAGgtatgattct ... catcttgcagGTGATGAATTTGATTGGTGATGTAAGGGGAAAGGTAGCAGTTATGGTTGAT
EST: gi|193523356|gb|FK482711.1|FK482711
EST:     CTCCTTTAGCTATTGTTGATAAAAGGCGCCATGGGCATAATGTTGCTGAG                         GTGATGAATTTGATTGGTGATGTAAGGGGAAAGGTAGCAGTTATGGTTGAT
genomic: CTCCTTTAGCTATTGTTGATAAAAGGCGCCATGGGCATAATGTTGCTGAGgtatgattct ... catcttgcagGTGATGAATTTGATTGGTGATGTAAGGGGAAAGGTAGCAGTTATGGTTGAT