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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAATATTTGAGATAAACTGCTCTAAGGACTTGAAAGTCCAAGGTATTATTGGCCCTTGTGCATCTCTTGAAAAGgtatgtctataagaactcgcctttttctgctacttatccccacaacatagatgcttatctgctgctttgtatttgcag

Basic information

species Glycine max
transcript GLYMA03G22740.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G22740.1 (Glycine max), 5'ss of exon 5
lower sequence: AT2G21630.1 (Arabidopsis thaliana), 5'ss of exon 4
TGGAATATTTGAGATAAACTGCTCTAAGGACTTGAAAGTCCAAGGTATTATTGGCCCTTGTGCATCTCTTGAAAAGgtatgtctataagaac-tcgcctttttctgctacttatccccacaacatagatgcttatctgctgctttgtatttgcag
||| |||||||| || |||||||| |||||  | ||||| || || |||||||||||||| |||||||| ||||||||||   ||||| |   |        |||  |  |  | | |  |   | |||   |||||| || ||   ||||||||
TGGTATATTTGAAATTAACTGCTCAAAGGATATCAAAGTTCAGGGAATTATTGGCCCTTGCGCATCTCTCGAAAAGgtat-catataaaactgttaaaggcatctatttttccttcgcttattgt-gatcaatatctgatgatt---atttgcag

upper sequence: GLYMA03G22740.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv15s0045g00540.t01 (Vitis vinifera), 5'ss of exon 5
TGGAATATTTGAGATAAACTGCTCTAAGGACTTGAAAGTCCAAGGTATTATTGGCCCTTGTGCATCTCTTGAAAAGgtatgtctataagaactc--gcctttttctgctacttatccccacaacatagatgcttatctgctgctttgtatttgcag
||| |||||||||||||||||||| |||||  | ||||| || || |||||||| || ||||||||||||||||||||||   |  |||   ||  |   | |     | ||  |     ||    | ||| |||     || |   | | |||||
TGGTATATTTGAGATAAACTGCTCAAAGGATATCAAAGTTCAGGGCATTATTGGTCCCTGTGCATCTCTTGAAAAGgtataatttgaagtgttctagtggtctctcttttctgctggttgcatttcacatgtttagtcattggtgcttttgtgcag