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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTATATGGTAGAAGAAATATGGCAAGAGCTTGCAAAGGCAAAATACCTTGAGTGGGAACGATTATCGTCCAAACGATCATGGGAATTGCAGTGCTTGAAgtatgtttttctggtgattgtcagacctattatctgagggtcctttagccatgattgtagtgctgttgtctatcatatttgttattacctaatgcataatttgtttagtttatctactatcaattattagttactgtccactgctaagtgttattgtcataaaatgtgttaaatgtctcag

Basic information

species Glycine max
transcript GLYMA03G22210.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G22210.2 (Glycine max), 5'ss of exon 5
lower sequence: AT3G07370.1 (Arabidopsis thaliana), 5'ss of exon 5
GCTATATGGTAGAAGAAATATGGCAAGAGCTTGCAAAGGCAAAATACCTTGAGTGGGAACGATTATCGTCCAAACGATCATGGGAATTGCAGTGCTTGAAgtatgtttttctggtgattg---tcagacctattatctgagggtcctttagccatgattgtagtgctgttgtctatcatatttgttattacctaatgcataatttgtttagtttatctactatcaattattagttactgtccactgctaagtgttattgtcataaaatgtgttaaatgtctcag
| ||||||||||||||||||||| |||||||| | || ||||||||| | ||||||||||   | ||  | |  || ||||||||| || |  | |||||||| ||| |     |   |     |||  |||| ||  ||    | |  | |  || || | |||   || |  | | ||||  |  ||   | |                                                                                         
GATATATGGTAGAAGAAATATGGGAAGAGCTTTCTAAAGCAAAATACATGGAGTGGGAACTGGTTTCTGCAATGCGGTCATGGGAACTGAATAGTTTGAAgtaggttctgtaactttcttaatccagtgctatcattcga----cttggaactgtgctttt-gtggctttatggaac-tattcatgtttgtgttag----------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7233098|gb|AW568448.1|AW568448
EST:     GAGTGGGAACGATTATCGTCCAAACGATCATGGGAATTGCAGTGCTTGAA                         AGAAGCTTGTGAGTCTGCTCTGAAGGAAAAACATTTTCTGGATTTCTCTCA
genomic: GAGTGGGAACGATTATCGTCCAAACGATCATGGGAATTGCAGTGCTTGAAgtatgttttt ... aatgtctcagAGAAGCTTGTGAGTCTGCTCTGAAGGAAAAACATTTTCTGGATTTCTCTCA
EST: gi|21888517|gb|BQ741730.1|BQ741730
EST:     GAGTGGGAACGATTATCGTCCAAACGATCATGGGAATTGCAGTGCTTGAA                         AGAAGCTTGTGAGTCTGCTCTGAAGGAAAAACATTTTCTGGATTTCTCTCA
genomic: GAGTGGGAACGATTATCGTCCAAACGATCATGGGAATTGCAGTGCTTGAAgtatgttttt ... aatgtctcagAGAAGCTTGTGAGTCTGCTCTGAAGGAAAAACATTTTCTGGATTTCTCTCA
EST: gi|192325145|gb|FK017531.1|FK017531
EST:     GAGTGGGAACGATTATCGTCCAAACGATCATGGGAATTGCAGTGCTTGAA                         AGAAGCTTGTGAGTCTGCTCTGAAGGAAAAATATTTTCTGGATTTCTCTCA
genomic: GAGTGGGAACGATTATCGTCCAAACGATCATGGGAATTGCAGTGCTTGAAgtatgttttt ... aatgtctcagAGAAGCTTGTGAGTCTGCTCTGAAGGAAAAACATTTTCTGGATTTCTCTCA
EST: gi|151405134|gb|EV274948.1|EV274948
EST:     GAGTGGGAACGATTATCGTCCAAACGATCATGGGAATTGCAGTGCTTGAA                         AGAAGCTTGTGAGTCTGCTCTGAAGGAAAAACATTTTCTGGATTTCTCTCA
genomic: GAGTGGGAACGATTATCGTCCAAACGATCATGGGAATTGCAGTGCTTGAAgtatgttttt ... aatgtctcagAGAAGCTTGTGAGTCTGCTCTGAAGGAAAAACATTTTCTGGATTTCTCTCA
EST: gi|151408132|gb|EV277940.1|EV277940
EST:     GAGTGGGAACGATTATCGTCCAAACGATCATGGGAATTGCAGTGCTTGAA                         AGAAGCTTGTGAGTCTGCTCTGAAGGAAAAATATTTTCTGGATTTCTCTCA
genomic: GAGTGGGAACGATTATCGTCCAAACGATCATGGGAATTGCAGTGCTTGAAgtatgttttt ... aatgtctcagAGAAGCTTGTGAGTCTGCTCTGAAGGAAAAACATTTTCTGGATTTCTCTCA