Sequence
atgc intronic sequence ATGC exonic sequenceGGGTCTTGCAACACCAACTGCAGTCATGGTTGCTTCTGGCATGGGTGCTTCTCAAGGTGTTCTCATCAAGGGTGGAGATGCACTGGAAAAGGCACACAAGgtgatgctatttctttttgctgttactccaaatctcgaattgtagtatgtaaactttgcttgcatttggagagcactaataaaaatttgtaaaagtaata...
Basic information
species | Glycine max |
transcript | GLYMA03G21650.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G21650.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os02g10290.1 (Oryza sativa), 5'ss of exon 6
GGGTCTTGCAACACCAACTGCAGTCATGGTTGCTTCTGGCATGGGTGCTTCTCAAGGTGTTCTCATCAAGGGTGGAGATGCACTGGAAAAGGCACACAAGgtgatgctatttctttttgctgttactccaaatctcgaattgtagtatgtaaactttgcttgcatttggagagcactaataaaa-atttgtaaaagtaata---------
|| || || || || ||||| || |||||||| |||| | |||||||||||||||||||| || |||||||| ||||||| || || || |||||||| | | ||| | ||| | || | | | | | | | | || ||| | | | |||| ||| | | | |
TGGACTGGCTACCCCGACTGCTGTTATGGTTGCCACTGGAAAAGGTGCTTCTCAAGGTGTTCTTATTAAGGGTGGCAATGCACTTGAGAAAGCTCACAAGgtaactgagatgatttcta-tgtcatgtattattttttctcacatcaaatgtattctattttt-tttatattgtgacactaaactattccttgtatttctttatgtgcag
upper sequence: GLYMA03G21650.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G029951_T01 (Zea mays), 5'ss of exon 5
GGGTCTTGCAACACCAACTGCAGTCATGGTTGCTTCTGGCATGGGTGCTTCTCAAGGTGTTCTCATCAAGGGTGGAGATGCACTGGAAAAGGCACACAAGgtgatgctatttctttttgctgttactccaaatctcgaattgtagtatgtaaactttgcttgcatttggagagcactaataaaaatt---tgtaaaagtaata-------------------------------
||| ||||| ||||||||||| || |||||||| |||| | ||||||||||||||||||||||| ||||||||| ||||||| || || || || ||||| | ||| | || || || | | || | | | ||| | | | || || || | | ||| ||| | | ||| ||||
GGGACTTGCTACACCAACTGCTGTTATGGTTGCAACTGGTAAAGGTGCTTCTCAAGGTGTTCTCATTAAGGGTGGAAATGCACTTGAGAAAGCTCATAAGgtaaatctagacatgatttcttttccagaagattttagg--gccacaagtacattattttt-caaatgaactgtactgtccaaattggcatacgaaactaatgtctcttttatttcatatatatccttttgcag
upper sequence: GLYMA03G21650.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv06s0004g01890.t01 (Vitis vinifera), 5'ss of exon 5
GGGTCTTGCAACACCAACTGCAGTCATGGTTGCTTCTGGCATGGGTGCTTCTCAAGGTGTTCTCATCAAGGGTGGAGATGCACTGGAAAAGGCACACAAGgtgatgctatttctttttgctg-ttactccaaatctcgaattgtagtatgtaaactttgcttgcatttggagagcactaataaaaatttgtaaaagtaata
||| || ||||| || || || || ||||| || | || | ||||||||| | |||||| ||||||||||||||| ||||||| || ||||| |||||||| | | | | ||| |||| |||| || ||| | | || | | | || | | | || | | |||| || |
GGGACTAGCAACCCCTACAGCGGTTATGGTGGCCACAGGGAAGGGTGCTTCGCTAGGTGTGCTCATCAAGGGTGGAAATGCACTTGAGAAGGCGCACAAGgtaacaccactattttctgctaactactagggatgaacaatagggatttggatttgatattaaagttcagtgtttagtactttgt-tgaacaaaaaaaaaaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|16281860|gb|BI944707.1|BI944707EST: CTCAAGGTGTTCTCATCAAGGGTGGAGATGCACTGGAAAAGGCACACAAG GTAAAAATTGTTGTGTTTGATAAGACTGGGACACTAACAGTTGGGAAGCCA
genomic: CTCAAGGTGTTCTCATCAAGGGTGGAGATGCACTGGAAAAGGCACACAAGgtgatgctat ... tccaatgcagGTAAAAATTGTTGTGTTTGATAAGACTGGGACACTAACAGTTGGGAAGCCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGGTCTTGCAACACCAACTGCAGTCATGGTTGCTTCTGGCATGGGTGCTTCTCAAGGTGTTCTCATCAAGGGTGGAGATGCACTGGAAAAGGCACACAAGgtgatgctatttctttttgctgttactccaaatctcgaattgtagtatgtaaactttgcttgcatttggagagcactaataaaaatttgtaaaagtaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aataaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaagtaa