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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTGTAGAAAGAGCAGAAAGCCTTCTACTCTCCTTGAAGCAGCGTTTTCCTGCTCTTCCTCAAACAGCCTTGGATATGAGCAAAATCCAATGCAACAAGgttagtatatctaattgtttataatgttacactttaaagccttttcattacttatatatgtttttggtagttttgtgttagtccctattcttttagttcc...

Basic information

species Glycine max
transcript GLYMA03G16610.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G16610.2 (Glycine max), 5'ss of exon 5
lower sequence: AT5G02010.1 (Arabidopsis thaliana), 5'ss of exon 6
ACTTGTAGAAAGAGCAGAAAGCCTTCTACTCTCCTTGAAGCAGCGTTTTCCTGCTCTTCCTCAAACAGCCTTGGATATGAGCAAAATCCAATGCAACAAGgttagtatatctaattgtttataatgttacactttaaagccttttcattacttata-tatgtttttggtagttttgtgttagtccctattcttttagttcc
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AATGGCGGATCGAGCTGAAAGTTTATTGCTTTCTTTAAAACAACGATTCCCAGGTCTTCCTCAAACCGCTCTAGACATGAGCAAAATCCAATACAACAAGgttactacatggaa-----------atcaaatcccaaatcattctttcttcttgtaatccgctctaaacagtttt-cctttttctctgttttag-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58021700|gb|CX708441.1|CX708441
EST:     CTGCTCTTCCTCAAACAGCCTTGGATATGAGCAAAATCCAATGCAACAAG                         GATGTTGGCAAATCCATTTTAGAGAGCTACTCAAGAGTACTAGAGAGTTTG
genomic: CTGCTCTTCCTCAAACAGCCTTGGATATGAGCAAAATCCAATGCAACAAGgttagtatat ... tttttactagGATGTTGGCAAATCCATTTTAGAGAGCTACTCAAGAGTACTAGAGAGTTTG