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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGATCTAGGGAGGAAGCTTGCTGAAATGCATAAAGCTGGAAAATCTAGTAAAGGCTTTGGTTTCGATGTTGATAACACCATTGGCAGgtttaatgcaccttcatcatgaaagttatcattgttgttgtaattgttattgttatcatttatcatgagttcttgactctttcttctttccgttttacctaggcatgtgctacttgtcaggatatatcagctatcatcttttgtttgtttgttcgaattagtttctaattacgttatgtatattatgctgtag

Basic information

species Glycine max
transcript GLYMA03G01960.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G01960.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G030299_T02 (Zea mays), 5'ss of exon 5
TCTGATCTAGGGAGGAAGCTTGCTGAAATGCATAAAGCTGGAAAATCTAGTAAAGGCTTTGGTTTCGATGTTGATAACACCATTGGCAGgtttaatgcaccttcatcatgaaagttatcattgttgttgtaattgttattgttatcatttatcatgagttcttgactctttcttctttccgttttacctaggcatgtgctacttgtcaggatatatcagctatcatcttttgtttgtttgttcgaattagtttctaattacgttatgtatattatgctgtag
|| ||| | || ||||||||||||||||||||||| ||||  ||||||  |||||| | |||||||   ||||| || || ||||| ||||  | |    ||||   ||||||        | | |   ||||||   ||  ||||   | |  |  ||   |  |    |  |||  | | |  |||||    | || || |   |||                                                                         
TCAGATTTGGGAAGGAAGCTTGCTGAAATGCATAAGGCTGCTAAATCTGATAAAGGATATGGTTTCCCGGTTGACAATACTATTGGAAGgt--agtatcacttcg--atgaaa--------tatggccttaattgaggtt--tatcgggtctgctatgtcagtctccacatagtctccctgatccacctat---tatgttattg--cag-------------------------------------------------------------------------

upper sequence: GLYMA03G01960.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv15s0048g01810.t01 (Vitis vinifera), 5'ss of exon 5
TCTGATCTAGGGAGGAAGCTTGCTGAAATGCATAAAGCTGGAAAATCTAGTAAAGGCTTTGGTTTCGATGTTGATAACACCATTGGCAGgtttaatgcaccttcatcatgaaagttatcattgttgttgtaattgttattgttatcatttatcatgagttc-ttgactctttcttctttccgttttacctaggcatgtgctacttgtcaggatatatcagctatcatcttttgtttgtttgttcgaattagtttctaattacgttatgtatattatgctgtag
 ||| | |||||||||||||||||||||||||||||||||||||||||   ||||| ||||| || ||||||||||| ||||| ||||||| |    || ||| |  || |  ||| || |  |     |  ||||   |||    |   |   | ||||| ||||     | ||||||  || || | | |                                                                                           
GCTGTTTTAGGGAGGAAGCTTGCTGAAATGCATAAAGCTGGAAAATCTGAAAAAGGATTTGGGTTTGATGTTGATAATACCATAGGCAGgtat----catctttaa-atcatcgttgtcgtcatcccactctttgtctctgtggaaaggca--gtaagttcattgagaaaattttctttatgtcttgctttgcag----------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|197661888|gb|FD480297.1|FD480297
EST:     GGAAAATCTAGTAAAGGCTTTGGTTTCGATGCTGATAACACCATTGGCAG                         CACTCCACAAGTAAACACCTGGTCATCAGATTGGGTTCAATTTTATGGAGA
genomic: GGAAAATCTAGTAAAGGCTTTGGTTTCGATGTTGATAACACCATTGGCAGgtttaatgca ... tatgctgtagCACTCCACAAGTAAACACCTGGTCATCAGATTGGGTTCAATTTTATGGAGA
EST: gi|192313607|gb|FK007283.1|FK007283
EST:     GGAAAATCTAGTAAAGGCTTTGGTTTCGATGTTGATAACACCATTGGCAG                         CACTCCACAAGTAAACACCTGGTCATCAGATTGGGTTCAATTTTATGGAGA
genomic: GGAAAATCTAGTAAAGGCTTTGGTTTCGATGTTGATAACACCATTGGCAGgtttaatgca ... tatgctgtagCACTCCACAAGTAAACACCTGGTCATCAGATTGGGTTCAATTTTATGGAGA
EST: gi|120496587|gb|EH224754.1|EH224754
EST:     GGGAAATCTAGTAAAGGCTTTGGTTTCGATGTTGATAACACCATTGGCAG                         CACTCCACAAGTAAACACCTGGTCATCAGATTGGGTTCAATTTTATGGAGA
genomic: GGAAAATCTAGTAAAGGCTTTGGTTTCGATGTTGATAACACCATTGGCAGgtttaatgca ... tatgctgtagCACTCCACAAGTAAACACCTGGTCATCAGATTGGGTTCAATTTTATGGAGA
EST: gi|192318364|gb|FK007282.1|FK007282
EST:     GGAAAATCTAGTAAAGGCTTTGGTTTCGATGTTGATAACACCATTGGCAG                         CACTCCACAAGTAAACACCTGGTCATCAGATTGGGTTCAATTTTATGGAGA
genomic: GGAAAATCTAGTAAAGGCTTTGGTTTCGATGTTGATAACACCATTGGCAGgtttaatgca ... tatgctgtagCACTCCACAAGTAAACACCTGGTCATCAGATTGGGTTCAATTTTATGGAGA
EST: gi|120496729|gb|EH224896.1|EH224896
EST:     GGAAAATCTAGTAAAGGCTTTGGTTTCGATGTTGATAACACCATTGGCAG                         CACTCCACAAGTAAACACCTGGTCATCAGATTGGGTTCAATTTTATGGAGA
genomic: GGAAAATCTAGTAAAGGCTTTGGTTTCGATGTTGATAACACCATTGGCAGgtttaatgca ... tatgctgtagCACTCCACAAGTAAACACCTGGTCATCAGATTGGGTTCAATTTTATGGAGA
EST: gi|6133930|gb|AW132323.1|AW132323
EST:     GGAAAATCTAGTAAAGGCTGTGGTTTCGATGTTGATAACACCATTGGCAG                         CACTCCACATGTAAACACCTTGTCATCAGATTGCGT-CAATTTTATGGAGA
genomic: GGAAAATCTAGTAAAGGCTTTGGTTTCGATGTTGATAACACCATTGGCAGgtttaatgca ... tatgctgtagCACTCCACAAGTAAACACCTGGTCATCAGATTGGGTTCAATTTTATGGAGA