Sequence
atgc intronic sequence ATGC exonic sequenceAAATTATTCCGGGTTATTTAGGCGTCCACGTGGAATGTATTTTAGTGCCAAAGATAAAGGAGAGATGATGTCAATGATCTATAACTGGCCAGCTCATGAGgtattgcattagttttagaaattcagtatcatcttctttttgttcattattgaaattggaaatagtcattttttcatatattcttcccttctaattctta...
Basic information
species | Glycine max |
transcript | GLYMA03G01680.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G01680.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os10g35960.2 (Oryza sativa), 5'ss of exon 4
AAATTATTCCGGGTTATTTAGGCGTCCACGTGGAATGTATTTTAGTGCCAAAGATAAAGGAGAGATGATGTCAATGATCTATAACTGGCCAGCTCATGAGgtattgcattagttttaga--aattcagtatcatcttctttttgttcattattgaaattggaaata-gtcattttttcatatattcttcccttctaattctta
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GAATTACAGTGGCTTGTTCAGGCGCCCCCGTGGGATGTATTTCAGCGCCAAGGATAAGGGGGAGATGATGTCGATGATTTACAACTGGCCAGCCGAGAAGgtac-acctgagtacttgactgttatagaataacaatttatttggacaccgatgttcttactagtatatcaaagaaagagattggtcaagatcgaaattca--
upper sequence: GLYMA03G01680.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G085747_T04 (Zea mays), 5'ss of exon 4
AAATTATTCCGGGTTATTTAGGCGTCCACGTGGAATGTATTTTAGTGCCAAAGATAAAGGAGAGATGATGTCAATGATCTATAACTGGCCAGCTCATGAGgtattgc---attagttttagaaattcagtatcatcttctttttgttcattattgaaattggaaatagtcattttttcatatattcttcccttctaattctta
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AAATTACAGCGGTCTGTTCAGACGACCCCGTGGGATGTATTTCAGTGCAAAGGATAAGGGGGAGATGATGTCAATGATTTACAACTGGCCAGCAGAGAAGgtatagctgaaagtgctgtctaaatgcacgttttcaagtaatgcctctagtgtagcgattaagattgagattatttgagtgtgggttcaactaatgagat---
upper sequence: GLYMA03G01680.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv15s0046g03670.t01 (Vitis vinifera), 5'ss of exon 4
AAATTATTCCGGGTTATTTAGGCGTCCACGTGGAATGTATTTTAGTGCCAAAGATAAAGGAGAGATGATGTCAATGATCTATAACTGGCCAGCTCATGAGgtattgcattagttttagaaa----ttcagtatcatcttctttttgttcattattgaaattggaa--atagtcattttttcatatattcttcccttctaattctta
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AAACTACTCGGGGTTGTTTAGACGTCCACGTGGAATGTATTTCAGTGGCAAGGATAAAGGAGAGATGATGTCCATGATCTACAACTGGCCAGCTCACCAGgtactgtgtgaatcttggaagagagttaattaaaacatggtatttcccctttatctatccctattccatagttattatttaacat-tccatttgttatatc-----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151395881|gb|EV265758.1|EV265758EST: AAGATAAAGGAGAGATGATGTCAATGATCTATAACTGGCCAGCTCATGAG GCAGGCATGATTGTCTTAACAGATGGAAGTCGAATTCTTGGCTTAGGTGAC
genomic: AAGATAAAGGAGAGATGATGTCAATGATCTATAACTGGCCAGCTCATGAGgtattgcatt ... tctgttgcagGTAGACATGATTGTCTTAACAGATGGAAGTCGAATTCTTGGCTTAGGTGAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAATTATTCCGGGTTATTTAGGCGTCCACGTGGAATGTATTTTAGTGCCAAAGATAAAGGAGAGATGATGTCAATGATCTATAACTGGCCAGCTCATGAGgtattgcattagttttagaaattcagtatcatcttctttttgttcattattgaaattggaaatagtcattttttcatatattcttcccttctaattctta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcccttc