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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAGTTGTTCTACATCTTGCACAAGCTCTAGAGTACTGCACAAGCAAAGGGCGTGCTCTCTATCATGACCTTAATGCATATAGAGTTCTTTTTGATGAGgtaagtttttgtgtatcccctttttatacatgtccctataattagattaataaaaaaatgtgttagaattttgcag

Basic information

species Glycine max
transcript GLYMA03G01300.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G01300.2 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os04g58750.2 (Oryza sativa), 5'ss of exon 5
AAGAGTTGTTCTACATCTTGCACAAGCTCTAGAGTACTGCACAAGCAAAGGGCGTGCTCTCTATCATGACCTTAATGCATATAGAGTTCTTTTTGATGAGgtaagt-ttttgtgtatcccctttttatacatgtcc--ctataattagattaataaaaaaatgt-gttagaattttgcag
||||||||||||  |||| ||  | ||| |||| || ||||| ||||| ||||||||||| || ||||| |||||||| || |||||||| |||||||| || ||| |  | |  ||    ||| || || ||  |  || |   |    ||| |     |||| |||   ||    |||
AAGAGTTGTTCTCTATCTGGCTGAGGCTTTAGAATATTGCACCAGCAAGGGGCGTGCTCTGTACCATGATCTTAATGCCTACAGAGTTCTCTTTGATGATgtgagtatcatatagattgtttttgta-acgtgatcatctgtgtgttttgtaacatttctatgttgtttacatggcacag

upper sequence: GLYMA03G01300.2 (Glycine max), 5'ss of exon 5
lower sequence: AT4G00710.1 (Arabidopsis thaliana), 5'ss of exon 5
AAGAGTTGTTCTACATCTTGCACAAGCTCTAGAGTACTGCACAAGCAAAGGGCGTGCTCTCTATCATGACCTTAATGCATATAGAGTTCTTTTTGATGAGgtaagtttttgt------------gtatcccctttttat-----acatgtccctataattagattaataaaaaaatgtgttagaattttgcag------------
| |||||||| || |||| ||||||||||| || |||||||| |||||||| ||| |||| || || ||||| ||||| ||  | ||| | ||||||||||||  | || ||            || |  ||| ||| |     || ||||  | |   ||   || |     | | | | |    ||    |            
ACGAGTTGTTTTATATCTAGCACAAGCTCTTGAATACTGCACCAGCAAAGGCCGTACTCTTTACCACGACCTCAATGCTTACCGGGTTTTGTTTGATGAGgtatttattagttatatataagcagtttttcctctttcttcgaaacctgtctatgtttctatgctattccttcattctctgacgccttaaggggcttttaataag

upper sequence: GLYMA03G01300.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv15s0046g02900.t01 (Vitis vinifera), 5'ss of exon 5
AAGAGTTGTTCTACATCTTGCACAAGCTCTAGAGTACTGCACAAGCAAAGGGCGTGCTCTCTATCATGACCTTAATGCATATAGAGTTCTTTTTGATGAGgtaagtttttgtgtatcccctt-------------tttatacatgtcc--ctataattagattaataaaaaaatgtgttagaattttgcag
||| || |||||||||||||| |||||| |||| || || ||| ||| ||||||||| || || |||||||||||||| |||||| || | || |||||||||| | ||| |  || |||||             ||| | | |||     | ||  |  |||  |  |   ||||  |||||||||||||
AAGGGTGGTTCTACATCTTGCCCAAGCTTTAGAATATTGTACAGGCAGAGGGCGTGCCCTTTACCATGACCTTAATGCTTATAGAATTTTGTTCGATGAGgtaaatattttttcattcccttaaatttggaatcctttttgcttgttagattctatatgcattcctctatttatgtactagaattttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151409998|gb|EV279806.1|EV279806
EST:     GGCGTGCTCTCTATCATGACCTTAATGCATATAGAGTTCTTTTTGATGAG                         GATGGTAATCCTAGGCTTTCGAGTTTTGGTCTTATGAAAAATAGCAGGGAT
genomic: GGCGTGCTCTCTATCATGACCTTAATGCATATAGAGTTCTTTTTGATGAGgtaagttttt ... aattttgcagGATGGTAATCCTAGGCTTTCGAGTTTTGGTCTTATGAAAAATAGCAGGGAT