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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATTATGGTTTAAGACAAATCTTAAGCTTTGTAAGATCTTCTTTGACATTGGGGAATATGGACGGATGAGTAAGgtaacatattagtattttgtgcaatgatgttggttgttttccagcttaatttgaatgtttctgtatctattggtatccatgagcgttgagtaatttattgattttgttgaaccctcag

Basic information

species Glycine max
transcript GLYMA03G00670.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G00670.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os01g17180.1 (Oryza sativa), 5'ss of exon 5
AGATTATGGTTTAAGACAAATCTTAAGCTTTGTAAGATCTTCTTTGACATTGGGGAATATGGACGGATGAGTAAGgtaacatattagtattttgtgcaatgatgttggttgttttccagcttaatttgaatgtttctgtatctattggtatccatga--gcgttgagtaatttattgattttgttgaaccctcag
|||||||||||||||||||| || |||||||| || || |  |||||||| ||||| ||||| |||||||| |||||  | ||| |  | ||| |  | | |  |||||| | ||      |  |       || || ||  ||||  |   | | |   | |   |||                          
AGATTATGGTTTAAGACAAACCTGAAGCTTTGCAAAATTTGGTTTGACATGGGGGAGTATGGCCGGATGAGCAAGgtg-cttat-acaagtttctctagtca-attggttttctttacatattctgcagtcattactctaattattt-tgctcgtaacttcttcctgtag-------------------------

upper sequence: GLYMA03G00670.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv08s0040g00430.t01 (Vitis vinifera), 5'ss of exon 5
AGATTATGGTTTAAGACAAATCTTAAGCTTTGTAAGATCTTCTTTGACATTGGGGAATATGGACGGATGAGTAAGgtaacatattagtattttgtgcaatgatgttggttgttttccagcttaatttgaatgtttctgtatctattggtatc-catgagcgttgagtaatttattgattttgttgaaccctcag---
||||| |||||||||||||||||||||||||| ||||| |  || ||||| || |||||||| || ||||||||||||   | ||||   | | ||    ||||      |  |||| |||   ||   ||||  |  ||| |||  |||   |||     |   ||||| ||  ||||||  || || || |    
AGATTGTGGTTTAAGACAAATCTTAAGCTTTGCAAGATTTGGTTCGACATGGGTGAATATGGGCGAATGAGTAAGgtatttttttagccctgtttggtcagatg----acgcattcctgctctgttctcatgtgcccttatatatatgtaaaacattttattatggtaatctaaggatttt--tggacactgaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151398925|gb|EV268796.1|EV268796
EST:     AGCTTTGTAAGATCTTCTTTGACATTGGGGAATATGGACGGATGAGTAAG                         ATATTGAAGGAACTTCATAAATCTTGTCAAAGGGAAGATGGTACAGATGAC
genomic: AGCTTTGTAAGATCTTCTTTGACATTGGGGAATATGGACGGATGAGTAAGgtaacatatt ... gaaccctcagATATTGAAGGAACTTCATAAATCTTGTCAAAGGGAAGATGGTACAGATGAC