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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATTGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAGgtaaattatataggctatttaatatatccatcatattgacaaatgtatttcaacggtagtatattgtggttctgatgtttatgtgttcatgcattttggcatattgattgcag

Basic information

species Glycine max
transcript GLYMA02G47460.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G47460.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os08g25734.2 (Oryza sativa), 5'ss of exon 5
AAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATTGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAGgtaaattatataggctatttaatatatccatcatattgacaaatgtatttcaacggtagtatattgtggttctgatgtttatgtgttcatgcattttggcatattgattgcag
||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||| || ||||||||||| || || ||||||||   | |  |   | |  |   |        |   ||  |  | |||| ||   |   |  || |  || |  |  |||||   | |   ||     || | |   |||||
AAGCTTACTTGTATGATGGTTACTGGGAAGACATTGGTACCATTGAGGCATTCTATAATGCAAATCTGGGAATAACGAAAAAGCCTGTACCAGATTTCAGgtatgcttt-caatttttacaccttgctgtggctgaagattatggaatttgaagcatgtgaatttataattgtc-tccttatgatataaaatataccatcaaaatatctgcag

upper sequence: GLYMA02G47460.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os09g12660.2 (Oryza sativa), 5'ss of exon 5
AAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATTGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAGgtaaattatataggctatttaatatatccatcatattgacaaatgtatttcaacggtagtatattgtggttctgatgtttatgtgttcatgcattttggcatattgattgcag
|||||||||| |||||||| ||||||||||| |||||||| || ||||| ||||| ||||| ||  |||| || ||||| || |||||||| || || ||||||  | || |   |   |  |  |  ||   || |   ||| |  |  ||    |  |  ||| |  | || || |||  |    ||  |||| | |  |   |       
AAGCTTACTTATATGATGGTTACTGGGAAGATATTGGTACTATAGAGGCATTCTACAATGCCAACTTGGGGATAACCAAGAAACCTGTGCCAGATTTTAGgtaaggtttacattttgcatggtgaaaacaagttacttttaaaagggtg-catttctgctgaattttcttcct-atttttgag----caaacattattgtgtgcag-------

upper sequence: GLYMA02G47460.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G106213_T02 (Zea mays), 5'ss of exon 5
AAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATTGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAGgtaaattatataggctatttaatatatccatcatattgacaaatgtatttcaacggtagtatattgtggttctgatgtttatgtgttcatgcattttggcatattgattgcag
|||||||||| |||||||| ||||||||||| |||||||| ||||| || || |||||||||||  ||||||| ||||| |||||||| || || || |||||   | | ||      |  ||| |   |  || |||   ||| |  |  | |       ||   | | ||  |  ||  ||| | ||                        
AAGCTTACTTATATGATGGTTACTGGGAAGATATTGGTACTATTGAAGCATTTTATAATGCAAACTTGGGAATAACCAAGAAGCCTGTACCGGATTTTAGgtatggtttgtacatgtctacataaagttaagatgttgc--aattttctagatctaccacttacctttgatcaaacattc-tgtatacag-----------------------

upper sequence: GLYMA02G47460.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G163437_T03 (Zea mays), 5'ss of exon 5
AAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATTGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAGgtaaat-tatataggctatttaatata-tccatcatattgaca-aatgtatttcaacggtagtatattgtggttctgatgtttatgtgttcat---gcattttgg--catattgattgcag
| |||||  | |||||||| || |||||||| ||||||||||||||||| || |||||||||||  ||||||| ||||| |||||  | || || ||||||||     || |   ||  | | | |  | ||  | |  |  | || |          ||   || || |  ||   ||   |   || | ||   || |||     ||   ||| | |||
AGGCTTATCTATATGATGGTTATTGGGAAGATATTGGTACAATTGAGGCATTTTATAATGCAAACTTGGGAATAACCAAGAAGCCAATACCAGATTTCAGgtatgcacattttcacttctcactgtgctgcagtagaaagttacaacgccgcatgcgtgtcaaatcttataatttcaattagtccctgctgatttagcgtttcccttcaatctgaatacag

upper sequence: GLYMA02G47460.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G068506_T03 (Zea mays), 5'ss of exon 5
AAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATTGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAGgta-aattatataggctatt-taatatatcc----atcatattgacaaatgtatttcaacggtagtatattgtggttctgatgtttatgtgttcatgcattttggcatattgattgcag
| |||||  |||||||||| ||||||||||| || ||||| |||| ||| || |||||||||||  ||||||| ||||| |||||  | || || ||||||||   ||  |      | | |  |  |        |   |  |    ||| || ||||  ||  || | | |   |  | |  |  ||  ||  ||         |   ||| | |||
AGGCTTATCTGTATGATGGTTACTGGGAAGATATCGGTACCATTGCGGCATTTTATAATGCAAACTTGGGAATAACCAAGAAGCCAATACCAGATTTCAGgtatgctttcacttctcactgtgctgcagttggaagttgcaacgctgcatgcatatcaa--gtcttacaatttcaattagttcctactgatttagtgttccccttaaatctgaatacag

upper sequence: GLYMA02G47460.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv12s0057g01480.t01 (Vitis vinifera), 5'ss of exon 5
AAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATTGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAGgtaaattatataggctatttaa-tatatccatcatattgacaaatgtatttcaacggtagtat-----attgtggttctgatg---tttatg-tgttcatgcattttggcatattgattgcag
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||| |||| ||||| || ||||| ||||| || ||||||||  || || || | ||   | | ||| |     |||   |  | | || |||| ||    |     |      ||||||||   |||||| | || ||    ||| | |  |  |||||||
AAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATTGAGGCTTTTTATAACGCTAATTTGGGGATCACAAAGAAGCCGGTGCCAGATTTCAGgtag-ttttacagcccatcagactgtatactgtgaattttgatctctgtt-caacagtttctttcattaccacatttctgatgcagtttatgatattaatatggttttgaacttaaattgcag

upper sequence: GLYMA02G47460.1 (Glycine max), 5'ss of exon 5
lower sequence: PP1S2_392V6.1 (Physcomitrella patens), 5'ss of exon 5
AAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATTGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAGgtaaattat-ataggctatttaatata---tccatcatattgacaaatgta-----tttcaacggtagtatattgtggttctgatgtttatgtgttcatgcattttggcatattgat--tgcag--------------------------------------------------------
|||| ||||||||||||||||||||||||||||| ||||| || ||||||||||| || || ||| |||| |||||||| ||||| ||||| || ||||||| | |    |     ||  | |  ||   || ||| |||||  |  || |      ||  | |  ||  |    ||    |    |||   |  |     ||| |    ||   ||  || ||                                                        
AAGCGTACTTGTATGATGGCTACTGGGAAGACATCGGTACTATCGAGGCTTTCTACAACGCGAATTTGGGCATCACCAAGAAGCCCGTGCCAGATTTCAGgtgagtagccagcaattagatgaattaaattcaatcgtattgtgatctgcaagttccttttatgacagcctcccttgaacttcgccttttgctaattgcttattattatttaggtatgctgtaggataatccactaaagcaatcattttttcgttaacatgctgctttttgcctcttcag

upper sequence: GLYMA02G47460.1 (Glycine max), 5'ss of exon 5
lower sequence: PP1S2_337V6.1 (Physcomitrella patens), 5'ss of exon 5
AAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATTGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAGgtaaattatataggctatttaatatatccatcatattgacaaatgtatttcaacggtagtatattgtggttctgatgtttatgtgttcatgcattttggcata--ttgattgcag
| || ||||| | |||||||||||||||||| ||||| || ||||| ||||| || || |||||  | |||||||| || ||||| || ||||| || |||| |||| | || |    | |  |||  |||  |     || |  |   | |||  | | |   ||        | | | |       |   ||   || |||  || ||     
AGGCCTACTTATTTGATGGCTACTGGGAAGATATTGGAACTATTGAAGCTTTTTACAACGCAAACTTAGGAATCACGAAGAAGCCCGTTCCTGATTTTAGgtgaattgtgtaagactgtaatgatagtcatggt-----cagaaatgcctgaacacttggaatctgcacggtcaaagataaaa-----aaaaatccaggaatagtttaat-----

upper sequence: GLYMA02G47460.1 (Glycine max), 5'ss of exon 5
lower sequence: PP1S239_45V6.1 (Physcomitrella patens), 5'ss of exon 5
AAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATTGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAGgtaaattatataggctatttaatatatccatcatattgacaaatgtatttcaacggtagt-atattgtggttctga----tgtttatgtgttcatgcattttggcatattgattgcag
|||| ||||||||||| |||||||||||||| ||||| || || || || ||||| ||||||||  | || ||||| || |||||||| ||||||||||||| |    |   ||     | ||  ||  |  | |   | | |  ||   ||||| |  | |||||     |||       | |||| || | |  |||| |                
AAGCCTACTTGTATGACGGCTACTGGGAAGATATTGGAACTATCGAAGCCTTCTACAATGCAAACTTAGGCATCACGAAGAAGCCTGTTCCTGACTTCAGgtgagcactc--ggtagaatgatgaatgtaagacaaatatacagctagggcaacgcttcttatattccctctctaggaaccgcttatatgattactcattct----------------

upper sequence: GLYMA02G47460.1 (Glycine max), 5'ss of exon 5
lower sequence: PP1S76_105V6.1 (Physcomitrella patens), 5'ss of exon 5
AAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATTGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAGgtaaattatataggctatttaatatatccatcatattgacaaatgtatttcaacggtagtatattgtggttctgatgtttatgtgttcatgcattttggcatattgattgcag---
||||||| ||||| ||||||||||||||||| ||||| || ||||| || ||||| ||||| |||||||| ||||| || || ||||| ||||| ||||||| | |||| |    | ||      |||  |||||     || | |  |  |       | | || |  |  || |    |||||| | |  |  ||||| | ||     | |   
AAGCTTATTTGTACGATGGCTACTGGGAAGATATTGGAACTATTGAAGCATTCTACAATGCCAATCTGGGCATCACTAAGAAACCTGTTCCTGATTTCAGgtgagttatcttccttctt------atctctcata-----aattctgctctag----gctttgttctaataatggtagaaatgtgtgcgt-taacttggcttgttatcgactgact

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22929719|gb|BU546858.1|BU546858
EST:     GGAATCACCAAAAAGCCTGTGCCTGACTTCAG                         TTTCTATGATCGTTCATCTCCAATNNACACCCAACCACGATATTNNCCTCC
genomic: GGAATCACCAAAAAGCCTGTGCCTGACTTCAGgtaaattata ... ttgattgcagTTTCTATGATCGTTCATCTCCAATCTACACCCAACCACGATATTTGCCTCC
EST: gi|51338121|gb|CO981987.1|CO981987
EST:     TTCTATAATGCAAATCTGGGANTCACCAAAAAGCCTGTGCCTGACTTCAG                         TTTCTATGATCGTTCATCTCCAATCTACACCCAACCACGATATTTGCCTCC
genomic: TTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAGgtaaattata ... ttgattgcagTTTCTATGATCGTTCATCTCCAATCTACACCCAACCACGATATTTGCCTCC
EST: gi|15589858|gb|BI674474.1|BI674474
EST:     TTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAG                         TTTCTATGATCGTTCATCTCCAATCTACACCCAACCACGATATTTGCCTCC
genomic: TTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAGgtaaattata ... ttgattgcagTTTCTATGATCGTTCATCTCCAATCTACACCCAACCACGATATTTGCCTCC
EST: gi|298174060|gb|HO017396.1|HO017396
EST:     TTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAG                         TTTCTATGATCGTTCATCTCCAATCTACACCCAACCACGATATTTGCCTCC
genomic: TTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAGgtaaattata ... ttgattgcagTTTCTATGATCGTTCATCTCCAATCTACACCCAACCACGATATTTGCCTCC
EST: gi|20498182|gb|BQ273112.1|BQ273112
EST:     TTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAG                         TTTCTATGATCGTTCATCTCCAATCTACACCCAACCACGATATTTGCCTCC
genomic: TTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAGgtaaattata ... ttgattgcagTTTCTATGATCGTTCATCTCCAATCTACACCCAACCACGATATTTGCCTCC
EST: gi|192316610|gb|FK006817.1|FK006817
EST:     TTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGTCTGACTTCAG                         TTTCTATGATCGTTCATCTCCAATCTACACCCAACCACGATATTTGCCTCC
genomic: TTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAGgtaaattata ... ttgattgcagTTTCTATGATCGTTCATCTCCAATCTACACCCAACCACGATATTTGCCTCC
EST: gi|193576586|gb|FK538387.1|FK538387
EST:     TTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAG                         TTTCTATGATCGTTCATCTCCAATCTACACCCAACCACGATATTTGCCTCC
genomic: TTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAGgtaaattata ... ttgattgcagTTTCTATGATCGTTCATCTCCAATCTACACCCAACCACGATATTTGCCTCC
EST: gi|6070729|gb|AW100116.1|AW100116
EST:     GCCTGACTTCAG                         TTTCTATGATCGTTCATCTCCAATCTACACCCAACCACGATATTTGCCTCC
genomic: GCCTGACTTCAGgtaaattata ... ttgattgcagTTTCTATGATCGTTCATCTCCAATCTACACCCAACCACGATATTTGCCTCC
EST: gi|207752357|gb|GD726226.1|GD726226
EST:     TTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAG                         TTTCTATGATCGTTCATCTCCAATCTAC
genomic: TTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAGgtaaattata ... ttgattgcagTTTCTATGATCGTTCATCTCCAATCTAC
EST: gi|16277058|gb|BI942182.1|BI942182
EST:     TTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAG                         TGTCTATGATCGTTCATCTCCAATCTACACCCAACCACGATATGTGCCTCC
genomic: TTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAGgtaaattata ... ttgattgcagTTTCTATGATCGTTCATCTCCAATCTACACCCAACCACGATATTTGCCTCC
EST: gi|20811566|gb|BQ296044.1|BQ296044
EST:     TTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAG                         TTTCTATGATCGTTCATCTCCAATCTACACCCAACCACGATATTTGCCTCC
genomic: TTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAGgtaaattata ... ttgattgcagTTTCTATGATCGTTCATCTCCAATCTACACCCAACCACGATATTTGCCTCC
EST: gi|16278915|gb|BI943160.1|BI943160
EST:     TTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAG                         TTTCTATGATCGTTCATCTCCAATCTACACCCAACCACGATATTTGCCTCC
genomic: TTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAGgtaaattata ... ttgattgcagTTTCTATGATCGTTCATCTCCAATCTACACCCAACCACGATATTTGCCTCC
EST: gi|13266691|gb|BG370154.1|BG370154
EST:     TTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAG                         TTTCTATGATCGTTCATCTCCAATCTACACCCAACCACGATATTTGCCTCC
genomic: TTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAGgtaaattata ... ttgattgcagTTTCTATGATCGTTCATCTCCAATCTACACCCAACCACGATATTTGCCTCC
EST: gi|23728098|gb|BU762095.1|BU762095
EST:     TTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAG                         TTTCTATGATCGTTCATCTCCAATCTACACCCAACCACGATATTTGCCTCC
genomic: TTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAGgtaaattata ... ttgattgcagTTTCTATGATCGTTCATCTCCAATCTACACCCAACCACGATATTTGCCTCC
EST: gi|15589806|gb|BI674422.1|BI674422
EST:     TTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAG                         TTTCTATGATCGTTCATCTCCAATCTACACCCAACCACGATATTTGCCTCC
genomic: TTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAGgtaaattata ... ttgattgcagTTTCTATGATCGTTCATCTCCAATCTACACCCAACCACGATATTTGCCTCC
EST: gi|15814292|gb|BI786567.1|BI786567
EST:     TTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAG                         TTTCTATGATCGTTCATCTCCAATCTACACCCAACCACGATATTTGCCTCC
genomic: TTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAGgtaaattata ... ttgattgcagTTTCTATGATCGTTCATCTCCAATCTACACCCAACCACGATATTTGCCTCC
EST: gi|46492701|gb|CN472257.1|CN472257
EST:     TTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAG                         TTTCTATGATCGTTCATCTCCAATCTACACCCAACCACGATATTTGCCTCC
genomic: TTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAGgtaaattata ... ttgattgcagTTTCTATGATCGTTCATCTCCAATCTACACCCAACCACGATATTTGCCTCC