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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTATCAGTTTGGCCAGTATGCATGGACACATATGATACTTATTGTTGTGTTTACCCAGTCTGCGTTCACTGTAGCCAACATATTTGCAGGGATATTCTGgtaacatgacttctgttatattactttgaggatgaaatctgcattttctaattctcttttagagtttatgctttcctattttagtgattttagcttaaac...

Basic information

species Glycine max
transcript GLYMA02G46440.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G46440.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G452529_T02 (Zea mays), 5'ss of exon 5
AGTATCAGTTTGGCCAGTATGCATGGACACATATGATACTTATTGTTGTGTTTACCCAGTCTGCGTTCACTGTAGCCAACATATTTGCAGGGATATTCTGgtaacatgacttctgttatattactttgaggatgaaatctgcattttctaattctcttttagagtt----tatgctttcctattttagtg-attttagcttaaac---
||||||||||    |||||||| |||||||| ||||||||| |    || ||| | |||||||| |||||||| || |||||||||| ||||||||||||||||  ||| |         || ||||  | || |  | |  |   | | |   | |||  ||  |      |||||  ||||||| ||  | ||||| ||| ||   
AGTATCAGTTCAAACAGTATGCCTGGACACACATGATACTTTTAACAGTTTTTGCACAGTCTGCTTTCACTGTGGCAAACATATTTGAAGGGATATTCTGgtaa-gtgattc-------gttcctttatgaataacctgtttagagtttcaacatttttgggatatatggagtgcttagctatttttgttcagtttaggttagacatg

upper sequence: GLYMA02G46440.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM5G825110_T01 (Zea mays), 5'ss of exon 5
AGTATCAGTTTGGCCAGTATGCATGGACACATATGATACTTATTGTTGTGTTTACCCAGTCTGCGTTCACTGTAGCCAACATATTTGCAGGGATATTCTGgtaacatgactt-ctgttatattactttgaggatgaaatctgcattttctaattctcttttagagtttatgctttcctattttagtgattttagcttaaac--
|||| |||||    |||||||| ||||| || ||||||||| |    || ||| | |||||||| |||||||| || |||||||||| ||||||||||||||||  ||| ||  | || |   | |     | | | |  | ||  |  |     |  | | |||    |   ||  |  |||  | | ||||| ||||||  
AGTACCAGTTCAAACAGTATGCCTGGACGCACATGATACTTCTAACGGTTTTTGCACAGTCTGCTTTCACTGTGGCAAACATATTTGAAGGGATATTCTGgtaa-gtgatttgtttttttgagaataacctgcttagagtttcaactagttgggataatgtggagcgcttagcttttt--tttgttcagtttaggttaaacat

upper sequence: GLYMA02G46440.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv19s0090g01220.t01 (Vitis vinifera), 5'ss of exon 4
AGTATCAGTTTGGCCAGTATGCATGGACACATATGATACTTATTGTTGTGTTTACCCAGTCTGCGTTCACTGTAGCCAACATATTTGCAGGGATATTCTGgtaacatgacttctgttata---ttacttt----gaggatgaaatctgc-attttctaattct--cttttagagtttatgctttcctattttagtgattttagcttaaac
||||||| ||||||||||||||||||||||| ||||| |||||||| ||||| || |||||  | || | ||||| ||| || |||| |||||| ||||||||| | ||||| ||  |||   ||| |||    |   |||  ||||   ||| | ||||||    | |||  ||   | || |    |||| |||  |           
AGTATCAATTTGGCCAGTATGCATGGACACACATGATTCTTATTGTGGTGTTCACGCAGTCCTCATTTATTGTAGGCAATATCTTTGAAGGGATTTTCTGgtaaaacgacttttgagataattttatttttcatgttaatgtgatctatgattatataattccaattattaatgtcattactctttctttttggtgcctg----------