1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GATCAACTCCACTATTCAAGTTGTGGAACATGAAGAAGCTCTGCGGACTTCCAACGCTTTGGAACTTCTCAGCAAgtataattttaataacaagattgatctttctttttgctcaaggcctctttcttctatgcttacctttttcatttcaatttgagtattaccactgactttttttccccttctgaattatgtgaatttggtag
species | Glycine max |
transcript | GLYMA02G46300.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GAACATGAAGAAGCTCTGCGGACTTCCAACGCTTTGGAACTTCTCGGCAA ATATGATATAATAGTAGATGCAACAGATGATGCTCCTACCCGGTACTTGATEST: gi|207734410|gb|GD712430.1|GD712430
genomic: GAACATGAAGAAGCTCTGCGGACTTCCAACGCTTTGGAACTTCTCAGCAAgtataatttt ... aatttggtagATATGATATAATAGTAGATGCAACAGATAATGCTCCTACCCGGTACTTGAT
EST: GAACATGAAGAAGCTCTGCGGACTTCCAACGCTTTGGAACTTCTCAGCAA ATATGATATAATAGTAGATGCAACAGATAATGEST: gi|207699690|gb|GD678947.1|GD678947
genomic: GAACATGAAGAAGCTCTGCGGACTTCCAACGCTTTGGAACTTCTCAGCAAgtataatttt ... aatttggtagATATGATATAATAGTAGATGCAACAGATAATG
EST: GAACATGAAGAAGCTCTGCGGACTTCCAACGCTTTGGAACTTCTCAGCAA ATATGATATAATAGTAGATGCAACAGATAATGCTCCTACCCGGTACTTGATEST: gi|193409684|gb|FK372022.1|FK372022
genomic: GAACATGAAGAAGCTCTGCGGACTTCCAACGCTTTGGAACTTCTCAGCAAgtataatttt ... aatttggtagATATGATATAATAGTAGATGCAACAGATAATGCTCCTACCCGGTACTTGAT
EST: GAACATGAAGAAGCTCTGCGGACTTCCAACGCTTTGGAACTTCTCAGCAA ATATGATATAATAGTAGATGCAACAGATAATGCTCCTACCCGGTACTTGATEST: gi|9899477|gb|BE608445.1|BE608445
genomic: GAACATGAAGAAGCTCTGCGGACTTCCAACGCTTTGGAACTTCTCAGCAAgtataatttt ... aatttggtagATATGATATAATAGTAGATGCAACAGATAATGCTCCTACCCGGTACTTGAT
EST: GAACATGAAGAAGCTCTGCGGACTTCCAACGCTTTGGAACTTCTCAGCAA ATATGATATAATAGTAGATGCAACAGATAATGCTCCTACCCGGTACTTGAT
genomic: GAACATGAAGAAGCTCTGCGGACTTCCAACGCTTTGGAACTTCTCAGCAAgtataatttt ... aatttggtagATATGATATAATAGTAGATGCAACAGATAATGCTCCTACCCGGTACTTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATCAACTCCACTATTCAAGTTGTGGAACATGAAGAAGCTCTGCGGACTTCCAACGCTTTGGAACTTCTCAGCAAgtataattttaataacaagattgatctttctttttgctcaaggcctctttcttctatgcttacctttttcatttcaatttgagtattaccactgactttttttccccttctgaattatgtgaatttggtag
- - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - AGAAGC