Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAATGGAGAAAGTATGGGCAGAAGATGGCGAAAGGGAATCCTTGGCCAAGAGCCTATTATCGTTGCACAATGAGTACTGGTTGTCCAGTGCGGAAACAGgtatgcactcttaattgctaggaaaagtgttctttcttgtgctgaggctagctaatttaagcaatattgaaagtgaatttatgtttgctgatag

Basic information

species Glycine max
transcript GLYMA02G46280.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G46280.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G62300.1 (Arabidopsis thaliana), 5'ss of exon 5
CCAATGGAGAAAGTATGGGCAGAAGATGGCGAAAGGGAATCCTTGGCCAAGAGCCTATTATCGTTGCACAATGAGTACTGGTTGTCCAGTGCGGAAACAGgtatgcact------cttaattgctaggaaaagtgttctttcttgtgctgaggctagctaatttaagcaatat-tgaaagtgaatttatgtttgctgatag--------------------
 ||||||||||| ||||| ||||||||||| |||||||||||||| ||  | || ||||| || ||||| |||   || || ||||| || || ||||| ||| |   |       ||||    | |   ||  | |  || ||||    |   |||  | || ||   |||| ||   | |   ||   |     | | |                    
TCAATGGAGAAAATATGGCCAGAAGATGGCCAAAGGGAATCCTTGTCCGCGGGCATATTACCGCTGCACGATGGCCACGGGCTGTCCCGTTCGCAAACAAgtaagatttaaaagatttaaccattggactaaaagattcttgttgtaaaaacattagagatttcaatgtatatatgtttgcgtgattggctaatacgttcggtccgaaatgatatttatag

upper sequence: GLYMA02G46280.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv19s0090g00840.t01 (Vitis vinifera), 5'ss of exon 5
CCAATGGAGAAAGTATGGGCAGAAGATGGCGAAAGGGAATCCTTGGCCAAGAGCCTATTATCGTTGCACAATGAGTACTGGTTGTCCAGTGCGGAAACAGgtatgcactctt---aattgctaggaaaagtgttctttctt-gtgctgaggctagctaatttaagcaatattgaaagtgaatttatgtttgctgatag----
|||||||||||||||||| || |||||||||||||| || || || ||  |||| |||||||| ||||| |||   |||| ||||||||| || ||||| |||||| |   |   |||  |       |   | | ||||| ||    ||  ||  |||       ||  ||   | |    |    |||| ||  |     
CCAATGGAGAAAGTATGGACAAAAGATGGCGAAAGGAAACCCATGCCCTCGAGCTTATTATCGATGCACCATGGCAACTGCTTGTCCAGTTCGCAAACAAgtatgctcctcttccaatcacccttgttacattccattcttagtttcaagtgtaattaagaaggaaaaatttattaattggatggaatttgatggcaaacag