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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAATGGTAACTTAGAACAATGGTTACATGGAAACATGCACCAATATGGGACGCTTACCTGGGAGGCCCGCATGAAAGTTATACTTGGCACTGCCAAAGCgtaagttcagggtgcaacttaaaatatataccatggtaatcatttgtatagtctggtgccaaatcactcagtataattatcatgaatctctcatctctga...

Basic information

species Glycine max
transcript GLYMA02G45540.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G45540.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv12s0028g00310.t01 (Vitis vinifera), 5'ss of exon 5
ACAATGGTAACTTAGAACAATGGTTACATGGAAACATGCACCAATATGGGACGCTTACCTGGGAGGCCCGCATGAAAGTTATACTTGGCACTGCCAAAGCgtaagttcagggtgcaacttaaaatatataccatggtaatcatttgtatagtctggtgccaaatcactcagtataattatcatgaatctctcatctctga----
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ACAATGGCAACTTAGAACAGTGGCTTCATGGAGCTATGCGCCAATATGGCAACCTTACTTGGGAGGCCCGCATGAAGGTTATTCTTGGTACAGCCAAGGCgtaagtccatctctcaactgaaaata-gtgtcatcattaagatttgcgttactagaaccgagattaatataggcaattacctcc--tctatt-tctatgaaatc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6481854|gb|AW201125.1|AW201125
EST:     ACGCTTACCTGGGAGGCCCGCATGANAGTTATACTTGGCACTGCCAAAGC                         GCTTGCTTATTTACATGAAGCAATAGAACCAAAAGTTATTCACCGGGATAT
genomic: ACGCTTACCTGGGAGGCCCGCATGAAAGTTATACTTGGCACTGCCAAAGCgtaagttcag ... ctggtggcagGCTTGCTTATTTACATGAAGCAATAGAACCAAAAGTTATTCACCGGGATAT