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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATGTCTCCAACAATGATTTATGTGGTACAATTCCTACATCTGGGCCATTCGAGCATATTCCATTGAATAAgtaatttcttcttaactctaagcatgtagctttcttcttattctccatgtggtgctattcatgttggtttttgctcgagtcttttcttctcttctgcacc...

Basic information

species Glycine max
transcript GLYMA02G44250.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G44250.2 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM5G815009_T02 (Zea mays), 5'ss of exon 5
GGATGTCTCCAACAATGATTTATGTGGTACAATTCCTACATCTGGGCCATTCGAGCATATTCCATTGAATAAgtaatttcttcttaactctaagcatgtagctttcttcttattctccatgtg-gtgctattcatgttggtttttgctcgagtcttttcttctcttctgcacc-----
 ||||| || | ||||||||||||||| || ||||| |||||||| ||||| ||||| |||||  |||  |||||| ||       | ||  |   || | |||  | | || | |  |         ||  | |       |||  ||    || | |    |   ||||       
CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttac-----attcctactttgcatcttcttgcatactttataaagataaattacacctcaaaacatttagtctt-cctctgccagacaagtgcagtaagtt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6719571|gb|AW307218.1|AW307218
EST:     TGTGGTACAATTCCTACATCTGGGCCATTCGAGCATATTCCATTGAATAA                         CTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG
genomic: TGTGGTACAATTCCTACATCTGGGCCATTCGAGCATATTCCATTGAATAAgtaatttctt ... aatgctgtagCTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG
EST: gi|7147246|gb|AW509168.1|AW509168
EST:     TGTGGTACAATTCCTACATCTGGGCCATTCGAGCATATTCCATTGAATAA                         CTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG
genomic: TGTGGTACAATTCCTACATCTGGGCCATTCGAGCATATTCCATTGAATAAgtaatttctt ... aatgctgtagCTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG
EST: gi|209710100|gb|BW653555.1|BW653555
EST:     TGTGGTACAATTCCTACATCTGGGCCCTTCGAGCATATTCCATTGAATAA                         CTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG
genomic: TGTGGTACAATTCCTACATCTGGGCCATTCGAGCATATTCCATTGAATAAgtaatttctt ... aatgctgtagCTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG
EST: gi|192301521|gb|FG994761.1|FG994761
EST:     TGTGGTACAATTCCTACATTTGGGCCATTCGAGCATATTCCATTGAATAA                         CTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG
genomic: TGTGGTACAATTCCTACATCTGGGCCATTCGAGCATATTCCATTGAATAAgtaatttctt ... aatgctgtagCTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG
EST: gi|14259491|gb|BG882399.1|BG882399
EST:     TGTGGTACAATTCCTACATCTGGGCCATTCGAGCATATTCCATTGAATAA                         CTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG
genomic: TGTGGTACAATTCCTACATCTGGGCCATTCGAGCATATTCCATTGAATAAgtaatttctt ... aatgctgtagCTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG
EST: gi|17021803|gb|BM092837.1|BM092837
EST:     TGTGGTACAATTCCTACATCTGGGCCATTCGAGCATATTCCATTGAATAA                         CTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG
genomic: TGTGGTACAATTCCTACATCTGGGCCATTCGAGCATATTCCATTGAATAAgtaatttctt ... aatgctgtagCTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG
EST: gi|8285001|gb|BE022560.1|BE022560
EST:     TGTGGTACAATTCCTACATCTGGGCCATTCGAGCATATTCCATTGAATAA                         CTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG
genomic: TGTGGTACAATTCCTACATCTGGGCCATTCGAGCATATTCCATTGAATAAgtaatttctt ... aatgctgtagCTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG
EST: gi|120530833|gb|EH258966.1|EH258966
EST:     TGTGGTACAATTCCTACATCTGGGCCATTCGAGCATATTCCATTGAATAA                         CTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG
genomic: TGTGGTACAATTCCTACATCTGGGCCATTCGAGCATATTCCATTGAATAAgtaatttctt ... aatgctgtagCTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG
EST: gi|14011806|gb|BG726728.1|BG726728
EST:     TGTGGTACAATTCCTACATCTGGGCCATTCGAGCATATTCCATTGAATAA                         CTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG
genomic: TGTGGTACAATTCCTACATCTGGGCCATTCGAGCATATTCCATTGAATAAgtaatttctt ... aatgctgtagCTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG
EST: gi|120531133|gb|EH259266.1|EH259266
EST:     TGTGGTACAATTCCTACATCTGGGCCATTCGAGCATATTCCATTGAATAA                         CTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG
genomic: TGTGGTACAATTCCTACATCTGGGCCATTCGAGCATATTCCATTGAATAAgtaatttctt ... aatgctgtagCTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG
EST: gi|120530964|gb|EH259097.1|EH259097
EST:     TGTGGTACAATTCCTACATCTGGGCCATTCGAGCATATTCCATTGAATAA                         CTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG
genomic: TGTGGTACAATTCCTACATCTGGGCCATTCGAGCATATTCCATTGAATAAgtaatttctt ... aatgctgtagCTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG
EST: gi|15200986|gb|BI424633.1|BI424633
EST:     ATATTCCATTGAATAA                         CTTTGAGAATAATCCCCCCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG
genomic: ATATTCCATTGAATAAgtaatttctt ... aatgctgtagCTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG
EST: gi|58020483|gb|CX707225.1|CX707225
EST:     TGTGGTACAATTCCTACATCTGGGCCATTCGAGCATATTCCATTGAATAA                         CTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG
genomic: TGTGGTACAATTCCTACATCTGGGCCATTCGAGCATATTCCATTGAATAAgtaatttctt ... aatgctgtagCTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG
EST: gi|21677284|gb|BQ629635.1|BQ629635
EST:     TGTGGTACAATTCCTACATCTGGGCCATTCGAGCATATTCCATTGAATAA                         CTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG
genomic: TGTGGTACAATTCCTACATCTGGGCCATTCGAGCATATTCCATTGAATAAgtaatttctt ... aatgctgtagCTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG
EST: gi|23726214|gb|BU761091.1|BU761091
EST:     TGTGGTACAATTCCTACATCTGGGCCCTTCGAGCATATTCCATTGAATAA                         CTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG
genomic: TGTGGTACAATTCCTACATCTGGGCCATTCGAGCATATTCCATTGAATAAgtaatttctt ... aatgctgtagCTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG
EST: gi|21601428|gb|BQ611759.1|BQ611759
EST:     TGTGGTACAATTCCTACATCTGGGCCATTCGAGCATATTCCATTGAATAA                         CTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG
genomic: TGTGGTACAATTCCTACATCTGGGCCATTCGAGCATATTCCATTGAATAAgtaatttctt ... aatgctgtagCTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG