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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAAAGGAGACTGGCTATGTTGGACTTAAGAACCAGGGAGCTACATGTTATATGAATTCTCTACTTCAAACTTTGTACCATATTCCTTATTTTCGAAAGgtcaggcattgtttctcttattgttgttttccttctgaagttttatttttttactggatagtgatgaggaagtttggatttgggtcctggatgtcatatttcag

Basic information

species Glycine max
transcript GLYMA02G43930.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G43930.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os01g56490.1 (Oryza sativa), 5'ss of exon 5
AAAAAAGGAGACTGGCTATGTTGGACTTAAGAACCAGGGAGCTACATGTTATATGAATTCTCTACTTCAAACTTTGTACCATATTCCTTATTTTCGAAAGgtcaggcattgtttctcttattgttgttttccttctgaagttttatttttttactggatagtgatgaggaagtttggatttgggtcctggatgtcatatttcag
 ||||||||||||||||||||||| |||||||| || || |||||||| || ||||||||||| ||||| ||  | ||||||||||| || || |||||||| ||||    |||        ||   ||  |||    |  |  ||  | | |   ||   ||||   ||   |   ||||  |                    
CAAAAAGGAGACTGGCTATGTTGGCCTTAAGAATCAAGGGGCTACATGCTACATGAATTCTCTTCTTCAGACGCTTTACCATATTCCGTACTTCCGAAAGgtgaggctaaattt--------gtaaattctctt----aaatgaatcctatgatgcgaggctgatacagagaatgatattttag--------------------

upper sequence: GLYMA02G43930.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os12g30540.1 (Oryza sativa), 5'ss of exon 5
AAAAAAGGAGACTGGCTATGTTGGACTTAAGAACCAGGGAGCTACATGTTATATGAATTCTCTACTTCAAACTTTGTACCATATTCCTTATTTTCGAAAGgtcaggcattgtttctcttattgttgttttccttctgaagttttatttttttactggatagtgatgaggaagtttggatttgggtcctggatgtcatatttcag
 |||||||| || || |||||||| || ||||| || |||||||| ||||||||||| ||||| || |||||  |||||||||| || |||||  | |||||| |  ||  || || ||  |  |  | | | |     |||   |   |  |||  | | | ||   ||| |||    || |                     
GAAAAAGGAAACAGGATATGTTGGTCTAAAGAATCAAGGAGCTACCTGTTATATGAACTCTCTTCTACAAACACTGTACCATATACCATATTTCAGGAAGgtctgagatcattactttt--tcctagtctacatgatttgttaagtacctgaacttaagactaatt--gaaatttcatcttag---------------------

upper sequence: GLYMA02G43930.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G014805_T01 (Zea mays), 5'ss of exon 5
AAAAAAGGAGACTGGCTATGTTGGACTTAAGAACCAGGGAGCTACATGTTATATGAATTCTCTACTTCAAACTTTGTACCATATTCCTTATTTTCGAAAGgtcaggc--attgtttctcttattgttgttttccttctgaagttttatttttttactggatagtgatgaggaagtttggatttgggtcctggatgtcatatttcag
 ||||| || || || | ||| || |||||||| || || ||||| ||||||||||||||||| |||||||| || |||||||  || |||||| ||||||| |     ||  ||  |||  |     | || ||         | | ||||  ||    || |||     | ||||  ||                         
GAAAAAAGAAACAGGTTTTGTAGGTCTTAAGAATCAAGGTGCTACCTGTTATATGAATTCTCTCCTTCAAACGTTATACCATACACCATATTTTAGAAAGgtgaaatcaatcattgttctgttctacatgtttctctaagcacctgaattttgaaccatttattga----aatgttttcatag-----------------------

upper sequence: GLYMA02G43930.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv06s0009g00960.t01 (Vitis vinifera), 5'ss of exon 5
AAAAAAGGAGACTGGCTATGTTGGACTTAAGAACCAGGGAGCTACATGTTATATGAATTCTCTACTTCAAACTTTGTACCATATTCCTTATTTTCGAAAGgtcaggcattgtttctcttattgttgttttccttctgaagttttatttttttactggatagtgatgaggaagtttggatttgggtcctggat-gtcatatttcag
||||||||| ||||| |||||||||||||||||||| ||||| || ||||| ||||| ||||| || |||||| | || |||||||| || ||| ||||||| |   |   ||  |||| ||  |   ||   ||||     |   || || |   |||| |  |||  | | |   | ||   |  |||||  |  | ||||||
AAAAAAGGAAACTGGTTATGTTGGACTTAAGAACCAAGGAGCAACTTGTTACATGAACTCTCTCCTCCAAACTCTCTATCATATTCCCTACTTTAGAAAGgttaataaccattgttcttttttctacattgtctctgttacatgtcttcttga--agatatt--tgaaaagggtaacaatt---ttttggatcatgttttttcag

upper sequence: GLYMA02G43930.1 (Glycine max), 5'ss of exon 5
lower sequence: PP1S104_2V6.1 (Physcomitrella patens), 5'ss of exon 5
AAAAAAGGAGACTGGCTATGTTGGACTTAAGAACCAGGGAGCTACATGTTATATGAATTCTCTACTTCAAACTTTGTACCATATTCCTTATTTTCGAAAGgtcaggcattgtttctcttattgttgttttccttctgaagttttatttttttactggatagtgatgaggaagtttggatttgggtcctggatgt--catatttcag------------------------------------------------------------
||| |||||||| || |  || ||  | ||||||||||| ||||| || || |||||||| || |||||||||||||| ||||| ||||| || || |||||      |  || |||||    |  | | |   |  |   || ||||     ||  | |||| | |     | | |      ||||||  |||    ||||   |                                                            
AAAGAAGGAGACAGGTTTCGTAGGCTTGAAGAACCAGGGTGCTACGTGCTACATGAATTCGCTTCTTCAAACTTTGTATCATATCCCTTACTTCCGCAAGgttccagttccttcctctttcactcatgtgcagccatataattcattta---gctataaagtgctcacagtatgtagtacaaagtcctgtttgtagtgtattcttgttgccacccacgaaaaatgcggtggtcatgatcatatatactggtttcaaatttggacag