Sequence
atgc intronic sequence ATGC exonic sequenceACTTGTTAGAAATGTACCACCTGATCCTGATGAATCGGTCAGTGAGCTAGTGGAACATTTCTTTTTGGTCAATCATCCAGATCACTATCTCACTCAGCAGgtctgatcctttctggttacaagtacacatgcctaattctgtttctctgtttcagagcttgtaatatggttttgtaatttgagtgtatcaaaatattaat...
Basic information
species | Glycine max |
transcript | GLYMA02G43910.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G43910.2 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os01g35050.3 (Oryza sativa), 5'ss of exon 5
ACTTGTTAGAAATGTACCACCTGATCCTGATGAATCGGTCAGTGAGCTAGTGGAACATTTCTTTTTGGTCAATCATCCAGATCACTATCTCACTCAGCAGgt----ctgatcctttctggttacaagtacacatgcctaattctgtttctctgtttcagagcttgtaatatggttttgtaatt-tgagtgtatcaaaatattaat
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CCTTGTGCGGAATATACCGCCTGATCCTGATGAATCAATTGGTGAGCTTGTGGAACATTTCTTCCTTGTAAACCATCCTGACCATTATCTTACGCACCAGgtaatatttatattttacagt--ctggtatttatgcttcactggatctttctgtctggtcagttcaaagttcatagcgaagtcatgtgaatagttatatgcc---
upper sequence: GLYMA02G43910.2 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G456000_T01 (Zea mays), 5'ss of exon 5
ACTTGTTAGAAATGTACCACCTGATCCTGATGAATCGGTCAGTGAGCTAGTGGAACATTTCTTTTTGGTCAATCATCCAGATCACTATCTCACTCAGCAGgt-ctgatcct----ttctggttacaagtacacatgcctaattctgtttctctgtttcagagcttgtaatatg-gttttgtaatttgagtgtatcaaaatattaat
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CCTTGTGCGGAATATACCACCAGATCCTGATGAATCAATCAGTGAGCTTGTGGAACATTTCTTCCTTGTCAATCATCCTGATCATTATCTACAACACCAGgtacttctactaaactgcggataaccatctcagatggttaatact--ctctgtgttgctatgcttttgctctttataatgcagttgatctttattaga-tatt---
upper sequence: GLYMA02G43910.2 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G021194_T01 (Zea mays), 5'ss of exon 5
ACTTGTTAGAAATGTACCACCTGATCCTGATGAATCGGTCAGTGAGCTAGTGGAACATTTCTTTTTGGTCAATCATCCAGATCACTATCTCACTCAGCAGgtc-tgatcctttctgg------ttacaagtacacatgcctaattctgtttctctgtttcagagcttgtaatatggttttgtaatttgagtgtatcaaaatattaat
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CCTTGTGCGGAATATACCGCCTGATCCAGATGAATCAATTAGTGAGCTTGTGGAACATTTCTTTCTTGTGAATCATCCTGGTCACTATCTGACACATCAGgtaataataatttataacataattcatgaatattcatgttatgatcccttattttattctaggagtttatctatggattctccgcc---gtgtagtatggttt----
upper sequence: GLYMA02G43910.2 (Glycine max), 5'ss of exon 5
lower sequence: AT3G21620.1 (Arabidopsis thaliana), 5'ss of exon 5
ACTTGTTAGAAATGTACCACCTGATCCTGATGAATCGGTCAGTGAGCTAGTGGAACATTTCTTTTTGGTCAATCATCCAGATCACTATCTCACTCAGCAGgtctgatcctttctggttacaagtacacatgcctaattctgtttctctgtttcagagcttgtaatatggttttgtaatttgagtgtatcaaaatattaat
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TCTTGTAAGGAACATTCCTCCAGATCCTGATGAATCAGTAAGTGAGCTCGTTGAGCATTTCTTTAAGGTCAACCATCCAGACTACTACCTCACTTACCAGgt-------------actacaactttggttgtctaacttaggat----gttccat-gttttcggtgtattcatct---tctcgtttaacaaaacag----
upper sequence: GLYMA02G43910.2 (Glycine max), 5'ss of exon 5
lower sequence: AT4G15430.1 (Arabidopsis thaliana), 5'ss of exon 5
ACTTGTTAGAAATGTACCACCTGATCCTGATGAATCGGTCAGTGAGCTAGTGGAACATTTCTTTTTGGTCAATCATCCAGATCACTATCTCACTCAGCAGgtctgatcctttctgg--ttacaa--gtacacatgcctaattctgtttctctgtttcagagcttgtaatatggttttgtaatttgagtgtatcaaaatattaat
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ACTGGTAAGAAACATTCCTGCAGATCCTCATGAATCAATATGTGAACTTGTTGAACATTTCTTCAAAGTCAATCATCCAGATCACTATCTCACTTTCCAGgtataatcatctttggattttctattgtatacatctctgacttgatttctgagttgatgatggt-tgatctgctttt--aactcag------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151403177|gb|EV272987.1|EV272987EST: TGGAACATTTCTTTTTGGTCAATCATCCAGATCACTATCTCACTCAGCAG GTTGTTTACAATGCAAAGAAACTTTCTAGTCTTGTTTCAAAGAAGAAGAAA
genomic: TGGAACATTTCTTTTTGGTCAATCATCCAGATCACTATCTCACTCAGCAGgtctgatcct ... atttctgcagGTTGTTTACAATGCAAAGAAACTTTCTAGTCTTGTTTCAAAGAAGAAGAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACTTGTTAGAAATGTACCACCTGATCCTGATGAATCGGTCAGTGAGCTAGTGGAACATTTCTTTTTGGTCAATCATCCAGATCACTATCTCACTCAGCAGgtctgatcctttctggttacaagtacacatgcctaattctgtttctctgtttcagagcttgtaatatggttttgtaatttgagtgtatcaaaatattaat
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