Sequence
atgc intronic sequence ATGC exonic sequenceGTCATTTGGAGAAGCAAGGAAGACCTTCCTGAGGAACTCATTTTCCACATTAACTATCTAGGAGCTGATCAACCCACCTTCACCCTCAACTTCTCCAAAGgtaattgacacactcaattggttcaataacaactaactagatacttgacctgaattatgcttttccctttgtaccattaattagtttatgcatattgatcactactaggtagtaggtactaatttctttcatgaaatatgcaatgcag
Basic information
species | Glycine max |
transcript | GLYMA02G40840.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G40840.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv04s0079g00600.t01 (Vitis vinifera), 5'ss of exon 4
GTCATTTGGAGAAGCAAGGAAGACCTTCCTGAGGAACTCATTTTCCACATTAACTATCTAGGAGCTGATCAACCCACCTTCACCCTCAACTTCTCCAAAGgtaattgacacactcaattggttcaataacaactaactagatacttgacctgaattatgcttttccctttgtaccattaattagtttatgcatattgatcactactaggtagtaggtactaatttctttcatgaaatatgcaatgcag
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GTGATTTGGAGGAGTAAAGAGGACTTGCCCGATGAGCTCATCTTTCATATCAACTATCTTGGAGCCGACCAACCTACCTTCACCCTCAACTTCTCCAAAGgtcc----ccttccaaactactgctacatctttgagatct-tttttgatgatcataatataatgcatgcta-agtattaattttcctcccaatgcag---------------------------------------------------
upper sequence: GLYMA02G40840.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv01s0011g06600.t01 (Vitis vinifera), 5'ss of exon 5
GTCATTTGGAGAAGCAAGGAAGACCTTCCTGAGGAACTCATTTTCCACATTAACTATCTAGGAGCTGATCAACCCACCTTCACCCTCAACTTCTCCAAAGgtaattgacacac-tcaattggttcaataacaactaac-tagatacttgacctgaattatgcttttccctttgtaccattaattagtttatgcatattgatcactactaggtagtaggtactaatttctttcatgaaatatgcaatgcag
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GTTGTTTGGAGGAGCAAAGAGGACTTGCCCGAAGAACTTATCTTTCACATAAACTACCTTGGAGCCGATCAACCAACCTTCACTCTCAATTTCTCCAAAGgtgactcaaacaaattctttgatcaagtcattgccattatagccttttgtctctcaacacaatctaaagtt-gta--actgcatgacatctgcag-------------------------------------------------------
upper sequence: GLYMA02G40840.1 (Glycine max), 5'ss of exon 5
lower sequence: PP1S8_163V6.1 (Physcomitrella patens), 5'ss of exon 4
GTCATTTGGAGAAGCAAGGAAGACCTTCCTGAGGAACTCATTTTCCACATTAACTATCTAGGAGCTGATCAACCCACCTTCACCCTCAACTTCTCCAAAGgta---attgacacactcaattggttcaataacaactaactagatactt--gacctg-aattatgcttttccctttgt-accatt--aattagtttatgca----tattgatcactactaggtagtaggtactaatttct--ttcatgaaatatgcaatgcag-----------------------------------
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GTTGTGTGGCGCAGCAAGGAGGACCTTCCCGAGGAGTTGATTTTTCACGTCAACTACTTGGGAGCCGATCAGCCCACCTTCACCCTCAACTTCTCTAAAGgtttgcactgctcttgttaaacgacttcaccagagtaaactgatctcttctaacctacggttactcttttcctgcagccatcgtctagaacagagcattcagcagcctcgagaacctcctgcgtgagggaaatgttgacagattggcgaggtcatcactacatctcactgtactaacgaccgttgtcttgtgagtcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|298171496|gb|HO016528.1|HO016528EST: TAACTATCTAGGAGCTGATCAACCCACCTTCACCCTCAACTTCTCCAAAG GTTCTAGCCAAGTTATTGCTCAGTACTACCAACTAATTCGACTGGGTTATG
genomic: TAACTATCTAGGAGCTGATCAACCCACCTTCACCCTCAACTTCTCCAAAGgtaattgaca ... tgcaatgcagGTTCTAGCCAAGTTATTGCTCAGTACTACCAACTAATTCGACTGGGTTATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTCATTTGGAGAAGCAAGGAAGACCTTCCTGAGGAACTCATTTTCCACATTAACTATCTAGGAGCTGATCAACCCACCTTCACCCTCAACTTCTCCAAAGgtaattgacacactcaattggttcaataacaactaactagatacttgacctgaattatgcttttccctttgtaccattaattagtttatgcatattgatcactactaggtagtaggtactaatttctttcatgaaatatgcaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT