1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTTGAAATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATGAAGATTTGGATGgtgagcagcatatacctgtgtaaatatttagtgtcaatagtggacttcgtgattgttctgattgcaagtagtagtatcttgagggatttttttgttaccgaacactgaatatttgatatactttttcgcttttag
species | Glycine max |
transcript | GLYMA02G40310.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATTAAGATTTGGATG ATCACCCTGAAGATGATGAAGGAGAAGTGGTTGCTCCCGAGGCTCGCTAEST: gi|151412916|gb|EV282728.1|EV282728
genomic: AATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATGAAGATTTGGATGgtgagcagca ... tcgcttttagATCACCCTGAAGATGATGAAGGAGAAGTGGTTGCTCCCGAGGCTCGCTA
EST: AATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATGAAGATTTGGATG ATCACCCTGAAGATGATGAAGGAGAAGTGGTTGCTCCCGAGGCTCGCTATCEST: gi|208281966|gb|GE080176.1|GE080176
genomic: AATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATGAAGATTTGGATGgtgagcagca ... tcgcttttagATCACCCTGAAGATGATGAAGGAGAAGTGGTTGCTCCCGAGGCTCGCTATC
EST: AATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATGAAGATTTGGATG ATCACCCTGAAGATGATGAAGGAGAAGTGGTTGCTCCCGAGGEST: gi|254337821|gb|GR849560.1|GR849560
genomic: AATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATGAAGATTTGGATGgtgagcagca ... tcgcttttagATCACCCTGAAGATGATGAAGGAGAAGTGGTTGCTCCCGAGG
EST: GAGATGCAAATG-AGATTTGGATG ATCA-CCTGAAGATGATGAAGGAGAAGTGGTTGCTCCCGAGGCTCGCTATCEST: gi|208244387|gb|GE042572.1|GE042572
genomic: GAGATGCAAATGAAGATTTGGATGgtgagcagca ... tcgcttttagATCACCCTGAAGATGATGAAGGAGAAGTGGTTGCTCCCGAGGCTCGCTATC
EST: AATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATGAAGATTTGGATG ATCACCCTGAAGATGATGAAGGAGAAGTGGTTGCTCCCGAGGCTCGCTATCEST: gi|38193867|gb|CF923073.1|CF923073
genomic: AATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATGAAGATTTGGATGgtgagcagca ... tcgcttttagATCACCCTGAAGATGATGAAGGAGAAGTGGTTGCTCCCGAGGCTCGCTATC
EST: AATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATGAAGATTTGGATG ATCACCCTGAAGATGATGAAGGAGAAGTGGTTGCTCCCGAGGCTCGCTATCEST: gi|58022083|gb|CX708824.1|CX708824
genomic: AATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATGAAGATTTGGATGgtgagcagca ... tcgcttttagATCACCCTGAAGATGATGAAGGAGAAGTGGTTGCTCCCGAGGCTCGCTATC
EST: ATGAGTAAC-TGAAATGATGAGAGTGGAGATGCAAATGAGGATTTGGATG ATCACCCTGAAGATGATGAAGGAGAAGTGGTTGCTCCCGAGGCTCGCTATCEST: gi|8827357|gb|BE211087.1|BE211087
genomic: ATGAGTAACTTG-AATGATGAGAGTGGAGATGCAAATGAAGATTTGGATGgtgagcagca ... tcgcttttagATCACCCTGAAGATGATGAAGGAGAAGTGGTTGCTCCCGAGGCTCGCTATC
EST: GAATGATGAGAGTGGAGATGCAAATGAAGATTTGGATG ATCACCCTGAAGATGATGAAGGAGAAGTGGTTGCTCCCGAGGCTCGCTATCEST: gi|208057088|gb|GD854179.1|GD854179
genomic: GAATGATGAGAGTGGAGATGCAAATGAAGATTTGGATGgtgagcagca ... tcgcttttagATCACCCTGAAGATGATGAAGGAGAAGTGGTTGCTCCCGAGGCTCGCTATC
EST: AATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATGAAGATTTGGATG ATCACCCTGAAGATGATGAAGGAGAAGTGGTTGCTCCCGAGGCTCGCTATCEST: gi|208314970|gb|GE112262.1|GE112262
genomic: AATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATGAAGATTTGGATGgtgagcagca ... tcgcttttagATCACCCTGAAGATGATGAAGGAGAAGTGGTTGCTCCCGAGGCTCGCTATC
EST: AATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATGAAGATTTGGATG ATCACCCTGAAGATGATGAAGGAGAAGTGGTTGCTCCCGAGGCTCGCTATCEST: gi|58020605|gb|CX707347.1|CX707347
genomic: AATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATGAAGATTTGGATGgtgagcagca ... tcgcttttagATCACCCTGAAGATGATGAAGGAGAAGTGGTTGCTCCCGAGGCTCGCTATC
EST: AATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATGAAGATTTGGATG ATCACCCTGAAGATGATGAAGGAGAAGTGGTTGCTCCCGAGGCTCGCTATCEST: gi|254337820|gb|GR849559.1|GR849559
genomic: AATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATGAAGATTTGGATGgtgagcagca ... tcgcttttagATCACCCTGAAGATGATGAAGGAGAAGTGGTTGCTCCCGAGGCTCGCTATC
EST: AATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATGAAGATTTGGATG ATCACCCTGAAGATGATGAAGGAGAAGTGGTTGCTCCCGAGGCTCGCTATCEST: gi|16347705|gb|BI973300.1|BI973300
genomic: AATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATGAAGATTTGGATGgtgagcagca ... tcgcttttagATCACCCTGAAGATGATGAAGGAGAAGTGGTTGCTCCCGAGGCTCGCTATC
EST: AATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATGAAGATTTGGATG ATCACCCTGAAGATGATGAAGGAGAAGCGGTTGNNNNNNNNGCTCGCTATC
genomic: AATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATGAAGATTTGGATGgtgagcagca ... tcgcttttagATCACCCTGAAGATGATGAAGGAGAAGTGGTTGCTCCCGAGGCTCGCTATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGAAATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATGAAGATTTGGATGgtgagcagcatatacctgtgtaaatatttagtgtcaatagtggacttcgtgattgttctgattgcaagtagtagtatcttgagggatttttttgttaccgaacactgaatatttgatatactttttcgcttttag
- - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - TGAAGA