Sequence
atgc intronic sequence ATGC exonic sequenceAGGCCCGGTGGGCTTCTTGCACGTGAGCTTGCAAGGCATGCTGTTGTACTTAAGGTCAATGACTGGGTCTTCTGTCATGGTGGACTTCTTCCTCACCATGgtaaatactttgtggcatttttctcttttcattttgtttaacttgagatggatttttttttttacttgagcagtatctactatatgtaatgctctatggttgcctgtttcaattttgttctaccttgattccaatgcttgatattattgtcttcgttttctgtag
Basic information
species | Glycine max |
transcript | GLYMA02G39710.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G39710.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G125140_T01 (Zea mays), 5'ss of exon 7
AGGCCCGGTGGGCTTCTTGCACGTGAGCTTGCAAGGCATGCTGTTGTACTTAAGGTCAATGACTGGGTCTTCTGTCATGGTGGACTTCTTCCTCACCATGgtaaatactttgtggcatttttctcttttcattttgtttaacttgagatggatttttttttttacttgagcagtatctactatatgtaa-tgctctatggttgcctgtttcaattttgttctaccttgattccaatgcttgatattattgtcttcgttttctgtag
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AAGCGAGGTGGTCCGCTAGCTCATGAATTGGCTCGGCATCCTGTTGTCCTCAAGATCAATGACTGGATTTTTTGTCATGGTGGCCTTCTTCCTCACCATGgtgagaccctt----cacctctccttggcatccttgttacccttggcaa-------tttgcatacgtgatctcagtctaaaacataaatctggttcaaggtcagaacctgc-------------------------------------------------------
upper sequence: GLYMA02G39710.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv06s0004g07390.t01 (Vitis vinifera), 5'ss of exon 5
AGGCCCGGTGGGCTTCTTGCACGTGAGCTTGCAAGGCATGCTGTTGTACTTAAGGTCAATGACTGGGTCTTCTGTCATGGTGGACTTCTTCCTCACCATGgtaaatactttgtggcatttttctcttttcatt--ttgtttaa-cttgagatggatttttttttttacttgagcagtatctactatatgtaatgctctatggttgcctgtttcaattttgttctaccttgattccaatgcttgatattattgtcttcgttttctgtag
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AGACCAGGGGGTCTATTGGCATGCGAGCTTGCACGACATGCTGTTGTTCTTAAAATCGATGACTGGGTGTTTTGTCATGGTGGTCTTCTTCCTCACCATGgtaaaaatagtaccattgccatttgaatgcattgcttgtttaaacttatgtaagacgttttatctttcttgtttgaaatgcctgata-ggagtgttg-gtacttccacag----------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|120530167|gb|EH258301.1|EH258301EST: TAAGGTCAATGACTGGGTCTTCTGTCATGGTGGACTTCTTCCTCACCATG TTGCATATGGCTTAGAGAGGATGAATAAAGAAGTGTCTGAGTGGATGAGAG
genomic: TAAGGTCAATGACTGGGTCTTCTGTCATGGTGGACTTCTTCCTCACCATGgtaaatactt ... ttttctgtagTTGCATATGGCTTAGAGAGGATGAATAAAGAAGTGTCTGAGTGGATGAGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGGCCCGGTGGGCTTCTTGCACGTGAGCTTGCAAGGCATGCTGTTGTACTTAAGGTCAATGACTGGGTCTTCTGTCATGGTGGACTTCTTCCTCACCATGgtaaatactttgtggcatttttctcttttcattttgtttaacttgagatggatttttttttttacttgagcagtatctactatatgtaatgctctatggttgcctgtttcaattttgttctaccttgattccaatgcttgatattattgtcttcgttttctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA