1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATCAACACTGTGTTGGGCTACCATGTTTTCTCTGCTTATCTATCTCTCATTCATAACTAGTCCACTTCTAGTGCTCAAGCTCTATGGAATTCCATATTGGgtaactaaattactcctacattgttactttttcctccttttttttattatttcaattctccaattggaaatttgaaatagttaccataattatgtaattgtttgatcatgtgcag
species | Glycine max |
transcript | GLYMA02G39230.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TCATAACTAGTCCACTTCTAGTGCTCAAGCTCTATGGAATTCCATATTGG ATATTTGTTATGTGGCTGGACTTTGTCACATACTTGCATCACCATGGTCACEST: gi|151407473|gb|EV277288.1|EV277288
genomic: TCATAACTAGTCCACTTCTAGTGCTCAAGCTCTATGGAATTCCATATTGGgtaactaaat ... tcatgtgcagATATTTGTTATGTGGCTGGACTTTGTCACATACTTGCATCACCATGGTCAC
EST: TCATAACTAGTCCACTTCTAGTGCTCAAGCTCTATGGAATTCCATATTGG ATATTTGTTATGTGGCTGGACTTTGTCACATACTTGCATCACCATGGTCACEST: gi|46492770|gb|CN472326.1|CN472326
genomic: TCATAACTAGTCCACTTCTAGTGCTCAAGCTCTATGGAATTCCATATTGGgtaactaaat ... tcatgtgcagATATTTGTTATGTGGCTGGACTTTGTCACATACTTGCATCACCATGGTCAC
EST: TCATAACTAGTCCACTTCTAGTGCTCAAGCTCTATGGAATTCCATATTGG ATATTTGTTATGTGGCTGGACTTTGTCACATACTTGCATCACCATGGTCACEST: gi|208219374|gb|GE020164.1|GE020164
genomic: TCATAACTAGTCCACTTCTAGTGCTCAAGCTCTATGGAATTCCATATTGGgtaactaaat ... tcatgtgcagATATTTGTTATGTGGCTGGACTTTGTCACATACTTGCATCACCATGGTCAC
EST: ATAACTAGTCCACTTCTAGTGCTCAAGCTCTAATAGGAATTCCATATTGG ATATTTGTTATGTGGCTGGACTTTGTCACATACTTGCATCACCATGGTCAC
genomic: ATAACTAGTCCACTTCTAGTGCTCAAGCTCT-AT-GGAATTCCATATTGGgtaactaaat ... tcatgtgcagATATTTGTTATGTGGCTGGACTTTGTCACATACTTGCATCACCATGGTCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCAACACTGTGTTGGGCTACCATGTTTTCTCTGCTTATCTATCTCTCATTCATAACTAGTCCACTTCTAGTGCTCAAGCTCTATGGAATTCCATATTGGgtaactaaattactcctacattgttactttttcctccttttttttattatttcaattctccaattggaaatttgaaatagttaccataattatgtaattgtttgatcatgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT