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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCATTGTCATTTTACAAGACAAAGCATATATATATGAAATAAATAGTCTCACAATCTTGGATACTATTGACACAGTGCCAAATATTAAAGgtgaggctggaaccaatatgtgatattatttcattcaataaggagacattaattgttgacttgcagttcttacttgttagattattattctattctcaattggagtgtgacaaacatggtgaattaaacttttaattatgccaaccaacagctatattatgcatatacttttctgaggcaattttccctgcag

Basic information

species Glycine max
transcript GLYMA02G36960.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15284959|gb|BI468850.1|BI468850
EST:     AAATAGTCTCACAATCTTGGATACTATTGACACAGTGCCAAATATTAAAG                         GACTTTGCGCTTTTTCCCCTAGTTTGGATGCATGTTACTTGGCTCTTCCTG
genomic: AAATAGTCTCACAATCTTGGATACTATTGACACAGTGCCAAATATTAAAGgtgaggctgg ... ttccctgcagGACTTTGCGCTTTTTCCCCTAGTTTGGATGCATGTTACTTGGCTCTTCCTG
EST: gi|193622817|gb|FK571535.1|FK571535
EST:     CCAAATATTAAAG                         GACTTTGCGCTTTTTCCCCTAGTTTGGATGCATGTTACTTGGCTCTTCCTG
genomic: CCAAATATTAAAGgtgaggctgg ... ttccctgcagGACTTTGCGCTTTTTCCCCTAGTTTGGATGCATGTTACTTGGCTCTTCCTG
EST: gi|207735719|gb|GD713054.1|GD713054
EST:     AAATAGTCTCACAATCTTGGATACTATTGACACAGTGCCAAATATTAAAG                         GACTTTGCGCTTTTTCCCCTAGTTTGGATGCATGTTACTTGGCTCTTCCTG
genomic: AAATAGTCTCACAATCTTGGATACTATTGACACAGTGCCAAATATTAAAGgtgaggctgg ... ttccctgcagGACTTTGCGCTTTTTCCCCTAGTTTGGATGCATGTTACTTGGCTCTTCCTG
EST: gi|193438789|gb|FK407078.1|FK407078
EST:     AAATAGTCTCACAATCTTGGATACTATTGACACAGTGCCAAATATTAAAG                         GACTTTGCGCTTTTTCCCCTAGTTTGGATGCATGTTACTTGGCTCTTCCTG
genomic: AAATAGTCTCACAATCTTGGATACTATTGACACAGTGCCAAATATTAAAGgtgaggctgg ... ttccctgcagGACTTTGCGCTTTTTCCCCTAGTTTGGATGCATGTTACTTGGCTCTTCCTG
EST: gi|192295491|gb|FG987105.1|FG987105
EST:     AAATAGTCTCACAATCTTGGATACTATTGACACAGTGCCAAATATTAAAG                         GACTTTGCGCTTTTTCCCCTAGTTTGGATGCATGTTACTTGGCTCTTCCTG
genomic: AAATAGTCTCACAATCTTGGATACTATTGACACAGTGCCAAATATTAAAGgtgaggctgg ... ttccctgcagGACTTTGCGCTTTTTCCCCTAGTTTGGATGCATGTTACTTGGCTCTTCCTG
EST: gi|193493227|gb|FK460033.1|FK460033
EST:     AAATAGTCTCACAATCTTGGATACTATTGACACAGTGCCAAATATTAAAG                         GACTTTGCGCTTTTTCCCCTAGTTTGGATGCATGTTACTTGGCTCTTCCTG
genomic: AAATAGTCTCACAATCTTGGATACTATTGACACAGTGCCAAATATTAAAGgtgaggctgg ... ttccctgcagGACTTTGCGCTTTTTCCCCTAGTTTGGATGCATGTTACTTGGCTCTTCCTG