Sequence
atgc intronic sequence ATGC exonic sequenceTATTCTGATTGGAACTTGGTTGTTCAACATCCAAACTTTGACAATCTGACCCAACTTTTCAGTTTCAACTACAAAGCAATAACTCCCTACGGGTCAATAAgtaagtgtgatctttcaaggacttgcaatcttacagacataaaatactgatggttatttaacttaattgaataaagtgtatagttttagaccaggcatca...
Basic information
species | Glycine max |
transcript | GLYMA02G35400.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G35400.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G29810.1 (Arabidopsis thaliana), 5'ss of exon 5
TATTCTGATTGGAACTTGGTTGTTCAACATCCAAACTTTGACAATCTGACCCAACTTTTCAGTTTCAACTACAAAGCAATAACTCCCTACGGGTCAATAAgtaagtgtgatctttcaaggacttgcaatcttacagacataaaatactgatggttatttaacttaattgaataaagtgtatagttttagaccaggcatca
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TACTCTCAGTGGAACTTAGTCGTTCAGCATCCCAACTTCGACAATCTCACTAAGCTTTTCAGTTTCAACTACAAACCGCTTAATCCTTACTTGAACATAAgtaagtttc-tcattcagattctttc--tcttgttcttaagaaatgtttggtttctaataatataatgttttggatcatata-ttgaag-----------
upper sequence: GLYMA02G35400.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv14s0083g01160.t01 (Vitis vinifera), 5'ss of exon 5
TATTCTGATTGGAACTTGGTTGTTCAACATCCAAACTTTGACAATCTGACCCAACTTTTCAGTTTCAACTACAAAGCAATAACTCCCTACGGGTCAATAAgtaagtgtgatctttcaaggacttgcaatcttacagacataaaatactgatggttatttaacttaattgaataaagtgtatagttttag-accaggcatca-
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TATACGCAGTGGAACTTAGTTGTCCAGCACCCCAACTTTGATAATCTGACCCAGATTTTCAGCTTTAACTACAAGTCATTGACACCCTATGCAGCTATAAgtaagttttaagccttcagttgtgaggctcttgttt-tttcctatattctttgc-attttatgccatggacaaaaacttggaataatggtggcatggatcaaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|298185762|gb|HO028073.1|HO028073EST: CCAACTTTTCAGTTTCAACTACAAAGCAATAACTCCCTACGGGTCAATAA ATGATACAGCAATGCTTTGGGGACTTAAGTTCTACAATGATTTTCTCATGC
genomic: CCAACTTTTCAGTTTCAACTACAAAGCAATAACTCCCTACGGGTCAATAAgtaagtgtga ... cttttaatagATGATACAGCAATGCTTTGGGGACTTAAGTTCTACAATGATTTTCTCATGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TATTCTGATTGGAACTTGGTTGTTCAACATCCAAACTTTGACAATCTGACCCAACTTTTCAGTTTCAACTACAAAGCAATAACTCCCTACGGGTCAATAAgtaagtgtgatctttcaaggacttgcaatcttacagacataaaatactgatggttatttaacttaattgaataaagtgtatagttttagaccaggcatca
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