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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACTTTAGCTGGTGTTTATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctctccatagggtggttgttcttaccgtttgcccaactatcagcattttctacagtacaatagtctaatttcacaatttaaatagacattaaga...

Basic information

species Glycine max
transcript GLYMA02G33320.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G33320.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv06s0004g04700.t01 (Vitis vinifera), 5'ss of exon 5
GAACTTTAGCTGGTGTTTATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctctccatagggtggttgttcttaccgtttgcccaactatcagcattttctacagtacaatagtctaatttcacaattta-aatagacattaaga--
||||  ||||||| || ||| | |||||||| |||||||  |||||||| |||||||||||||| ||||||||  |  |  ||   ||     | ||  |  |   | |  |||    || |   ||| |        ||| |||||    | | || | |   |      
GAACCGTAGCTGGAGTATATGTGGGAATGGAGTATGGGGCGGAGAGGATTCGTGGCACCAGAGACTGGgtaatt-ttgcagtatattgccaaatgttttctgtattcta--tatatatatatgaaacaatgtggctccctattttcattgatcacaaaacatgcttcattc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209713427|gb|BW679242.1|BW679242
EST:     ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGG                         AAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
genomic: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
EST: gi|213600861|gb|DB968825.1|DB968825
EST:     ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGG                         AAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
genomic: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
EST: gi|193475489|gb|FK440282.1|FK440282
EST:     CACCAGAGATTGG                         AAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
genomic: CACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
EST: gi|213590361|gb|DB971523.1|DB971523
EST:     ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGG                         AAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
genomic: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
EST: gi|208322550|gb|GE125195.1|GE125195
EST:     ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGG                         AAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
genomic: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
EST: gi|31561930|gb|CD487768.1|CD487768
EST:     ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGG                         AAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
genomic: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
EST: gi|209710522|gb|BW662058.1|BW662058
EST:     ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGG                         AAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
genomic: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
EST: gi|7639460|gb|AW733782.1|AW733782
EST:     ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGG                         AAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
genomic: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
EST: gi|208317400|gb|GE113297.1|GE113297
EST:     GGGGTAGAGAGGATCCGTGGCACCAGAGATTGG                         AAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
genomic: GGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
EST: gi|192334661|gb|FK025880.1|FK025880
EST:     ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGG                         AAGAATGCCATGATTGGGGGCGCAGTAACTGCGACTCTGTTATCTGTTGCC
genomic: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
EST: gi|10255267|gb|BE823033.1|BE823033
EST:     ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGG                         AAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
genomic: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
EST: gi|193310065|gb|FK275893.1|FK275893
EST:     ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGG                         AAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
genomic: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
EST: gi|209710523|gb|BW662059.1|BW662059
EST:     ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGG                         AAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
genomic: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
EST: gi|17023100|gb|BM094134.1|BM094134
EST:     ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGG                         AAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
genomic: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
EST: gi|46492865|gb|CN472421.1|CN472421
EST:     ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGG                         AAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
genomic: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
EST: gi|192334662|gb|FK025881.1|FK025881
EST:     ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGG                         AAGAATGCCATGATTGGGGGCGCAGTAACTGCGACTCTGTTATCTGTTGCC
genomic: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
EST: gi|214006081|gb|DB986005.1|DB986005
EST:     ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGG                         AAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
genomic: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
EST: gi|298170437|gb|HO019061.1|HO019061
EST:     ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGG                         AAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
genomic: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
EST: gi|192314746|gb|FK005986.1|FK005986
EST:     ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGG                         AAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
genomic: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
EST: gi|209713426|gb|BW679241.1|BW679241
EST:     ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGG                         AAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
genomic: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
EST: gi|193658038|gb|FK601981.1|FK601981
EST:     CACCAGAGATTGG                         AAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
genomic: CACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
EST: gi|209703490|gb|BW683351.1|BW683351
EST:     ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGG                         AAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
genomic: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
EST: gi|208178822|gb|GD979615.1|GD979615
EST:     ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGG                         AAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
genomic: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
EST: gi|209722595|gb|BW679844.1|BW679844
EST:     ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGG                         AAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
genomic: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
EST: gi|192314745|gb|FK005985.1|FK005985
EST:     ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGG                         AAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
genomic: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
EST: gi|209706732|gb|BW676046.1|BW676046
EST:     ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGG                         AAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
genomic: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
EST: gi|209703489|gb|BW683350.1|BW683350
EST:     ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGG                         AAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
genomic: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
EST: gi|209706733|gb|BW676047.1|BW676047
EST:     ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGG                         AAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
genomic: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
EST: gi|208237995|gb|GE038075.1|GE038075
EST:     GGAATAGTGGGGTAGAGAGGATCCGTGGCACCAGAGATTGG                         AAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
genomic: GGAATA-TGGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
EST: gi|209722594|gb|BW679843.1|BW679843
EST:     ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGG                         AAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
genomic: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
EST: gi|193381913|gb|FK348442.1|FK348442
EST:     ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGG                         AAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
genomic: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
EST: gi|6915982|gb|AW397512.1|AW397512
EST:     ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGG                         AAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
genomic: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAACTTTAGCTGGTGTTTATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctctccatagggtggttgttcttaccgtttgcccaactatcagcattttctacagtacaatagtctaatttcacaatttaaatagacattaaga

- - - - - - - - - - - - - - - - - - - -  GAGAGG
- - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - -  GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agggtgg