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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACGGGCCATATACATAAACATTCAAAAATTTGTGCAGTTTCAGTTAACAGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGCATCACAGgtttgttgattcataaacattttgtttccactgcagtgttgtcgaatctgtttcaatgaacaaccgatttcattttcttccttattttcag

Basic information

species Glycine max
transcript GLYMA02G32780.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G32780.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os11g04460.1 (Oryza sativa), 5'ss of exon 5
GGACGGGCCATATACATAAACATTCAAAAATTTGTGCAGTTTCAGTTAACAGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGCATCACAGgt----------ttgttg-attcat---aaacattttgtttccactgcagtgttgtcgaatctgtttcaatgaacaaccgatttcattttcttccttattttcag
|| || ||  | || || ||||| ||||| |||||||||||||| || || ||||||||||||||| |  |||| || ||||| || |||||||||||||||          || | | ||||||   | ||  | | |||||| |  |||| |  |  ||    | |||   |  ||  || |   | |||||| |     |||
GGTCGTGCAGTTTATATTAACATCCAAAAGTTTGTGCAGTTTCAATTGACTGTCAATATTGTTGCTTTAGTTATCAATTTTGTCTCAGCATGCATCACAGgtgagggcaacattatagtattcatctgataccatgtatttccatta-agtggttccccatgatctccaacacagtactaatgtttctctcttccgt---cacag

upper sequence: GLYMA02G32780.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os12g04220.1 (Oryza sativa), 5'ss of exon 5
GGACGGGCCATATACATAAACATTCAAAAATTTGTGCAGTTTCAGTTAACAGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGCATCACAGgtttgttgattcataaacattttgtttc---cactgcagtgttgtcgaatctgtttcaatga-----acaaccgatttcattttcttccttattttcag--
|| || ||  | || || ||||| ||||| ||||||||||||||||| || ||||||||||||||| |  | || || ||||| || |||||||||| ||||  |   |    || |   ||  | |    |  || | |    |  | |   | || ||||     |  || |   | || || | |  |    |||   
GGTCGTGCAGTTTATATTAACATCCAAAAGTTTGTGCAGTTTCAGTTGACTGTCAATATTGTTGCTTTAGTCATCAATTTTGTCTCAGCATGCATCATAGgtgagggcaacattatagtattcatctgatgctatgtatttccattaagtggttctccatgatctccaagacagtactaatgttttgctcttccgtcacag

upper sequence: GLYMA02G32780.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os05g41580.1 (Oryza sativa), 5'ss of exon 5
GGACGGGCCATATACATAAACATTCAAAAATTTGTGCAGTTTCAGTTAACAGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGCATCACAGg--tttgttgattcataaacattttgtttccactgcagtgttgtcgaatctgtttcaatgaacaaccgatttcattttcttccttattttcag-----------
|| || ||  | ||| ||||||| || || ||||||||||| ||| | ||||| |||||||| ||||||||| | || ||||| || || ||||||| |||  || |   | |    | || | |  |   | ||   |  ||  ||  |||||| ||  |  ||    | |  ||||||    ||  |||             
GGCCGTGCAGTTTACTTAAACATCCAGAAGTTTGTGCAGTTCCAGCTTACAGTTAATATTGTGGCTCTGATTGTGAATTTTGTCTCAGCGTGCATCATAGgtattagcacacttgctaccactctaatattattgatctaatgatga--ctgtttgaa--atgaatgtgtattgttttctagaataaattcgtatgcattttat

upper sequence: GLYMA02G32780.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G104730_T02 (Zea mays), 5'ss of exon 6
GGACGGGCCATATACATAAACATTCAAAAATTTGTGCAGTTTCAGTTAACAGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGCATCACAGgtttgttg--attcat---aaacattttgtttccactgcagtgttgtcgaatc----tgtttcaatgaacaaccgat--ttcattttcttccttattttcag---------------------------------------------
|| || ||  | ||||||||||| || || || |||||||||||| | || ||||| ||||| |||||| | || |||||||| || |||||||| |||||||||  |  ||| |      |||||    || || |  | ||     |   |       |||| | |        |  |  || | || |  |    || |                                             
GGCCGCGCGGTCTACATAAACATCCAGAAGTTCGTGCAGTTTCAGCTGACCGTCAACATTGTGGCTCTGGTCATCAACTTTGTCTCGGCATGCATTACAGgtttggggccatttacctatgacattcctcttgcaatataatggccatgggccatggctgttcagttagtggttcttggtatatctgctgctatgccatctggagtaacagtgctttgagtgctgtactactgtactgctacgacag

upper sequence: GLYMA02G32780.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G357620_T01 (Zea mays), 5'ss of exon 5
GGACGGGCCATATACATAAACATTCAAAAATTTGTGCAGTTTCAGTTAACAGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGCATCACAGgtttgt------tgattcata--aacattttgttt--ccactgc-agtgttgtcgaatctgtttcaatgaacaac-cgatttcattttcttccttattttcag
|| || ||  | ||||||||||| ||||| || |||||||| ||| | || ||||| ||||||||| || | || ||||| || || |||||||| ||||||  |       | ||   ||  |   |||  |||  ||| ||| ||| ||| |      |||| |   || ||| |  ||      | |   ||   ||   
GGTCGTGCGGTTTACATAAACATCCAAAAGTTCGTGCAGTTCCAGCTGACTGTCAACATTGTTGCTTTGGTCATCAACTTCGTCTCAGCATGCATTACAGgtgcgcgcatcatcatctgtagtagtgtttcctttctccaatgccagtattgccatggtcgttttacccaaaaacactgttctgcactgtagattgcatt---

upper sequence: GLYMA02G32780.1 (Glycine max), 5'ss of exon 5
lower sequence: AT2G41560.1 (Arabidopsis thaliana), 5'ss of exon 5
GGACGGGCCATATACATAAACATTCAAAAATTTGTGCAGTTTCAGTTAACAGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGCATCACAGgtttgttgattcataaacattttgtttccactgcagtgttgtcgaatctgtttcaatgaacaaccgatttcattttcttccttattttcag
||||| ||  |||| ||||||||||| || ||||| ||||| ||| |||| || ||| | ||||||||||| || |||||||| ||||| ||||||||||||  |       | || || |      |||      | || | |  | || |  |||  |  | | ||||| |||  || |||  || |||
GGACGTGCTGTATATATAAACATTCAGAAGTTTGTTCAGTTCCAGCTAACTGTTAATGTGGTTGCTCTGATCATCAACTTTGTCTCTGCTTGCATCACAGgtacgacaga--aaaaccaatcaaacaccatctt--tcttctagcgtttggtcaaatatagtaaccatttcttttggtttctt--ttccag

upper sequence: GLYMA02G32780.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G57330.1 (Arabidopsis thaliana), 5'ss of exon 5
GGACGGGCCATATACATAAACATTCAAAAATTTGTGCAGTTTCAGTTAACAGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGCATCACAGgtttgttgattcataaacattttgtttccactgcagtg-ttgtcgaat--ctgtttcaatgaacaaccgatttcattttcttccttattttcag
||||| ||  | || || ||||| || || ||||| ||||| ||| |||| || ||| ||||||||||||| || |||||||| ||||| |||||||| |||  ||  | ||| | ||||      |   |  || || || | ||||  | |||||| | ||  |  | |||     | |||           
GGACGTGCTGTGTATATCAACATCCAGAAGTTTGTTCAGTTCCAGCTAACTGTTAATGTTGTTGCTCTGATCATCAACTTTGTCTCTGCTTGCATCACTGgtaagtaaaatcaaacacatgcacaattttcaccaatgatttttgaataacagtttcagt-aatgattgttttgcaccttttcag---------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208317976|gb|GE116701.1|GE116701
EST:     TTTCTGCATGCATCACAG                         GATCTGCTCCCCTCACAGCTGTTCAGTTGCTTTGGGTCAACTTGATTATGG
genomic: TTTCTGCATGCATCACAGgtttgttgat ... ttattttcagGATCTGCTCCCCTCACAGCTGTTCAGTTGCTTTGGGTCAACCTGATTATGG
EST: gi|193668302|gb|FK612638.1|FK612638
EST:     AGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGCATCACAG                         GATCTGCTCCCCTCACAGCTGTTCAGTTGCTTTGGGTCAACCTGATTATGG
genomic: AGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGCATCACAGgtttgttgat ... ttattttcagGATCTGCTCCCCTCACAGCTGTTCAGTTGCTTTGGGTCAACCTGATTATGG
EST: gi|208322224|gb|GE122181.1|GE122181
EST:     AGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGCATCACAG                         GATCTGCTCCCCTCACAGCTGTTCAGTTGCTTTGGGTCAACCTGATTATGG
genomic: AGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGCATCACAGgtttgttgat ... ttattttcagGATCTGCTCCCCTCACAGCTGTTCAGTTGCTTTGGGTCAACCTGATTATGG
EST: gi|193591252|gb|FK546465.1|FK546465
EST:     AGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGCATCACAG                         GATCTGCTCCCCTCACAGCTGTTCAGTTGCTTTGGGTCAACTTGATTATGG
genomic: AGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGCATCACAGgtttgttgat ... ttattttcagGATCTGCTCCCCTCACAGCTGTTCAGTTGCTTTGGGTCAACCTGATTATGG
EST: gi|193602895|gb|FK555420.1|FK555420
EST:     AGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGCATCACAG                         GATCTGCTCCCCTCACAGCTGTTCAGTTGCTTTGGGTCAACCTGATTATGG
genomic: AGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGCATCACAGgtttgttgat ... ttattttcagGATCTGCTCCCCTCACAGCTGTTCAGTTGCTTTGGGTCAACCTGATTATGG
EST: gi|151405499|gb|EV275313.1|EV275313
EST:     AGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGCATCACAG                         GATCTGCTCCCCTCACAGCTGTTCAGTTGCTTTGGGTCAACCTGATTATGG
genomic: AGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGCATCACAGgtttgttgat ... ttattttcagGATCTGCTCCCCTCACAGCTGTTCAGTTGCTTTGGGTCAACCTGATTATGG
EST: gi|208283086|gb|GE077334.1|GE077334
EST:     AGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGCATCACAG                         GATCTGCTCCCCTCACAGCTGTTCAGTTGCTTTGGGTCAACTTGATTATGG
genomic: AGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGCATCACAGgtttgttgat ... ttattttcagGATCTGCTCCCCTCACAGCTGTTCAGTTGCTTTGGGTCAACCTGATTATGG
EST: gi|193363344|gb|FK326238.1|FK326238
EST:     TTGCTCTGATTA-TAACTTTGTTTCTGCATGCATCACAG                         GATCTGCTCCCCTCACAGCTGTTCAGTTGCTTTGGGTCAACTTGATTATGG
genomic: TTGCTCTGATTATTAACTTTGTTTCTGCATGCATCACAGgtttgttgat ... ttattttcagGATCTGCTCCCCTCACAGCTGTTCAGTTGCTTTGGGTCAACCTGATTATGG
EST: gi|193452619|gb|FK417583.1|FK417583
EST:     AGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGCATCACAG                         GATCTGCTCCCCTCACAGCTGTTCAGTTGCTTTGGGTCAACCTGATTATGG
genomic: AGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGCATCACAGgtttgttgat ... ttattttcagGATCTGCTCCCCTCACAGCTGTTCAGTTGCTTTGGGTCAACCTGATTATGG
EST: gi|193521913|gb|FK480806.1|FK480806
EST:     AGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGCATCACAG                         GATCTGCTCCCCTCACAGCTGTTCAGTTGCTTTGGGTCAACTTGATTATGG
genomic: AGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGCATCACAGgtttgttgat ... ttattttcagGATCTGCTCCCCTCACAGCTGTTCAGTTGCTTTGGGTCAACCTGATTATGG
EST: gi|193658824|gb|FK607269.1|FK607269
EST:     AGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGCATCACAG                         GATCTGCTCCCCTCACAGCTGTTCAGTTGCTTTGGGTCAACCTGATTATGG
genomic: AGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGCATCACAGgtttgttgat ... ttattttcagGATCTGCTCCCCTCACAGCTGTTCAGTTGCTTTGGGTCAACCTGATTATGG
EST: gi|193641441|gb|FK589019.1|FK589019
EST:     AGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGCATCACAG                         GATCTGCTCCCCTCACAGCTGTTCAGTTGCTTTGGGTCAACCTGATTATGG
genomic: AGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGCATCACAGgtttgttgat ... ttattttcagGATCTGCTCCCCTCACAGCTGTTCAGTTGCTTTGGGTCAACCTGATTATGG
EST: gi|254325639|gb|GR838520.1|GR838520
EST:     AGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGCATCACAG                         GATCTGCTCCCCTCACAGCTGTTCAGTTGCTTTGGGTCAACCTGATTATGG
genomic: AGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGCATCACAGgtttgttgat ... ttattttcagGATCTGCTCCCCTCACAGCTGTTCAGTTGCTTTGGGTCAACCTGATTATGG
EST: gi|208151547|gb|GD946510.1|GD946510
EST:     AGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGCATCACAG                         GATCTGCTCCCCTCACAGCTGTTCAGTTGCTTTGGGTCA
genomic: AGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGCATCACAGgtttgttgat ... ttattttcagGATCTGCTCCCCTCACAGCTGTTCAGTTGCTTTGGGTCA
EST: gi|208083780|gb|GD881728.1|GD881728
EST:     GTCAATATTGTTGCTCTGATTATTAACTTTGTTTTCTGCATGCATCACAG                         GATCTGCTCCCCTCACAGCTGTTCAGTTGCTTTGGGTCAACCTGATTATGG
genomic: GTCAATATTGTTGCTCTGATTATTAACTTTGTTT-CTGCATGCATCACAGgtttgttgat ... ttattttcagGATCTGCTCCCCTCACAGCTGTTCAGTTGCTTTGGGTCAACCTGATTATGG
EST: gi|193571246|gb|FK532253.1|FK532253
EST:     AGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGCATCACAG                         GATCTGCTCCCCTCACAGCTGTTCAGTTGCTTTGGGTCAAC
genomic: AGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGCATCACAGgtttgttgat ... ttattttcagGATCTGCTCCCCTCACAGCTGTTCAGTTGCTTTGGGTCAAC
EST: gi|208176837|gb|GD977686.1|GD977686
EST:     AGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGCATCACAG                         GATCTGCTCCCCTCACAGCTGTTCAGTTGCTTTGGGTCAACCTGATTATGG
genomic: AGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGCATCACAGgtttgttgat ... ttattttcagGATCTGCTCCCCTCACAGCTGTTCAGTTGCTTTGGGTCAACCTGATTATGG
EST: gi|208174266|gb|GD971237.1|GD971237
EST:     AGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGCATCACAG                         GATCTGCTCCCCTCACAGCTGTTCAGTTGCTTTGGGTCAACTTGATTATGG
genomic: AGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGCATCACAGgtttgttgat ... ttattttcagGATCTGCTCCCCTCACAGCTGTTCAGTTGCTTTGGGTCAACCTGATTATGG
EST: gi|208206601|gb|GE002462.1|GE002462
EST:     AGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGCATCACAG                         GATCTGCTCCCCTCACAGCTGTTCAGTTGCTTTGGGTCAACCTGATTATGG
genomic: AGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGCATCACAGgtttgttgat ... ttattttcagGATCTGCTCCCCTCACAGCTGTTCAGTTGCTTTGGGTCAACCTGATTATGG
EST: gi|5057752|gb|AI736228.1|AI736228
EST:     AGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGCATCACAG                         GATCTGCTCCCCTTACAGCTG
genomic: AGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGCATCACAGgtttgttgat ... ttattttcagGATCTGCTCCCCTCACAGCTG
EST: gi|14999736|gb|BI320550.1|BI320550
EST:     AGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGCATCACAG                         GATCTGCTCCCCTCACAGCTGTTCAGTTGCTTTGGGTCAACTTGATTATGG
genomic: AGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGCATCACAGgtttgttgat ... ttattttcagGATCTGCTCCCCTCACAGCTGTTCAGTTGCTTTGGGTCAACCTGATTATGG