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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCGGAAATATATCAGGAGACTTTGTCCAAGGCACTTGTGAAGCATTTTGGTGCCAGGCTACTAATTGTGGATTCTCTTTCACTGCCTGGTgtatgttttcttagatattctgcttttgttacaattatagaggttttgtagaatttttccttactagttctttgttgcttcagatctttcttggcatagtgacattgtttgcttgcttctgtagattgtttgttgctaaattaggatttaggattaatatacacacagttgttctcattgtgcaattggtttttcag

Basic information

species Glycine max
transcript GLYMA02G17400.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G17400.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv07s0005g00200.t01 (Vitis vinifera), 5'ss of exon 8
GTTCGGAAATATATCAGGAGACTTTGTCCAAGGCACTTGTGAAGCATTTTGGTGCCAGGCTACTAATTGTGGATTCTCTTTCACTGCCTGGTgtatgttttcttagatattctgcttttgttacaattatagaggttttgtagaatttttccttactagttct--ttgttgcttcagatctttcttggcatagtgacattgtttgcttgcttctgtagattgtttgttgctaaattaggatttaggattaatatacacacagttgttctcattgtgcaattggtttttcag
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GTTCTGAAATATACCAGGAAACTTTGACAAAGGCACTTGCTAAACATTTTACTGCCAGACTGCTTATTGTTGATTCTCTTCTATTGCCTGGTgtaagctttctt-gatattttgcgcacttc----cttgcgtggttgtacttcatatactcgtactatttctagttttgaccatagaagtaattgcttgtgaggaaatt------tcatctttgtctgccacttgctaataatttcag----------------------------------------------------