1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CAGGCCTCCTGTATTGCCTGGTTCATATGTACAAGGGGCGTATGGTCCTGTACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCGgtgagaggggcatgtgtgtgtagagaaaagtcaattttttcttcatttcagcagctgctttattctgatgtttttaaatcggtgcag
species | Glycine max |
transcript | GLYMA02G17250.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCG GCACCTGTAAGTCCTGTGCTATCTCCTGGCACTCAACCTGCTGTTGGGGCCEST: gi|207819359|gb|GD792821.1|GD792821
genomic: TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCGgtgagagggg ... atcggtgcagGCACCTGTAAGTCCTGTGCTATCTCCTGGCACTCAACCTGCTGTTGGGGCC
EST: TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCG GCACCTGTAAGTCCTGTGCTATCTCCTGGCACTCAACCTEST: gi|207788849|gb|GD761205.1|GD761205
genomic: TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCGgtgagagggg ... atcggtgcagGCACCTGTAAGTCCTGTGCTATCTCCTGGCACTCAACCT
EST: TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCG GCACCTGTAAGTCCTGTGCTATCTCCTGGCACTCAACCTGCTGTTGGGGCCEST: gi|151397510|gb|EV267383.1|EV267383
genomic: TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCGgtgagagggg ... atcggtgcagGCACCTGTAAGTCCTGTGCTATCTCCTGGCACTCAACCTGCTGTTGGGGCC
EST: TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCG GCACCTGTAAGTCCTGTGCTATCTCCTGGCACTCAACCTGTTGTTGGGGCCEST: gi|193448741|gb|FK411086.1|FK411086
genomic: TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCGgtgagagggg ... atcggtgcagGCACCTGTAAGTCCTGTGCTATCTCCTGGCACTCAACCTGCTGTTGGGGCC
EST: TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCG GCACCTGTAAGTCCTGTGCTATCTCCTGGCACTCAACCTGCTGTCGGGGCCEST: gi|193501095|gb|FK464612.1|FK464612
genomic: TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCGgtgagagggg ... atcggtgcagGCACCTGTAAGTCCTGTGCTATCTCCTGGCACTCAACCTGCTGTTGGGGCC
EST: TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCG GCACCTGTAAGTCCTGTGCTATCTCCTGGCACTCAACCTGCTGTTGGGGCCEST: gi|193516721|gb|FK476895.1|FK476895
genomic: TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCGgtgagagggg ... atcggtgcagGCACCTGTAAGTCCTGTGCTATCTCCTGGCACTCAACCTGCTGTTGGGGCC
EST: TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCG GCACCTGTAAGTCCTGTGCTATCTCCTGGCACTCAACCTGCTGTTGGGGCCEST: gi|207776789|gb|GD749173.1|GD749173
genomic: TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCGgtgagagggg ... atcggtgcagGCACCTGTAAGTCCTGTGCTATCTCCTGGCACTCAACCTGCTGTTGGGGCC
EST: TGGATGGAGTCATTATTCG GCACCTGTAAGTCCTGTGCTATCTCCTGGCACTCAACCTGCTGTTGGGGCCEST: gi|208201095|gb|GE001689.1|GE001689
genomic: TGGATGGAGTCATTATTCGgtgagagggg ... atcggtgcagGCACCTGTAAGTCCTGTGCTATCTCCTGGCACTCAACCTGCTGTTGGGGCC
EST: TGCTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCG GCACCTGTAAGTCCTGTGCTATCTCCTGGCACTCAACCTGCTGTTGGGGCCEST: gi|208238556|gb|GE039028.1|GE039028
genomic: TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCGgtgagagggg ... atcggtgcagGCACCTGTAAGTCCTGTGCTATCTCCTGGCACTCAACCTGCTGTTGGGGCC
EST: TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCG GCACCTGTAAGTCCTGTGCTATCTCCTGGCACTCAACCTEST: gi|151398628|gb|EV268499.1|EV268499
genomic: TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCGgtgagagggg ... atcggtgcagGCACCTGTAAGTCCTGTGCTATCTCCTGGCACTCAACCT
EST: TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCG GCACCTGTAAGTCCTGTGCTATCTCCTGGCACTCAACCTGCTGTTGGGGCC
genomic: TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCGgtgagagggg ... atcggtgcagGCACCTGTAAGTCCTGTGCTATCTCCTGGCACTCAACCTGCTGTTGGGGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGGCCTCCTGTATTGCCTGGTTCATATGTACAAGGGGCGTATGGTCCTGTACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCGgtgagaggggcatgtgtgtgtagagaaaagtcaattttttcttcatttcagcagctgctttattctgatgtttttaaatcggtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA