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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTGCTGCTGGTTTTGCATTACCTGTTGGAAGTGAGGCATTTGAAGAGTCGGGTCGCTCACTTGTACGTGGAACTTTGGATTATCTGCAAGGTCTCAAGgtgcgagtgttcgcatccatccaatccttctgctcccctctccctgcaaaaataaaagaaaaatagaagcattaagctgcttattttgtaaactgacataattgagaccatgttttcag

Basic information

species Glycine max
transcript GLYMA02G16860.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G16860.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv07s0104g00630.t01 (Vitis vinifera), 5'ss of exon 5
GGGTGCTGCTGGTTTTGCATTACCTGTTGGAAGTGAGGCATTTGAAGAGTCGGGTCGCTCACTTGTACGTGGAACTTTGGATTATCTGCAAGGTCTCAAGgtgcgagtgttcgcatccatccaatccttctgctcccctctccctgcaaaaataaaagaaaaatagaagcattaagctgcttattttgtaaactgacataattgagaccatgttttcag-
 |||||  | ||||| | |||  | ||||||||||| |  ||||| ||||| ||  | || ||||||||||||||  | |||||||| ||||||||||||||  |           | || || |  ||           |          | || | | | |     ||||  |  |||   | ||  || || |  |  | |  |  ||||||| |  
AGGTGCCACGGGTTTGGTATTGACAGTTGGAAGTGAAGTGTTTGAGGAGTCAGGGAGATCCCTTGTACGTGGAACACTAGATTATCTCCAAGGTCTCAAGgtttgt---------cctattcagtgtttgcaaattaactt----------aaaagacacacacctttgcatgcatgtgccgttgtttcaagcttaatttttggcaattatgtttttaag

upper sequence: GLYMA02G16860.2 (Glycine max), 5'ss of exon 5
lower sequence: EFJ28927 (Selaginella moellendorffii), 5'ss of exon 5
GGGTGCTGCTGGTTTTGCATTACCTGTTGGAAGTGAGGCATTTGAAGAGTCGGGTCGCTCACTTGTACGTGGAACTTTGGATTATCTGCAAGGTCTCAAGgtgcga-gtgttcgcatccatccaatccttctgctcccctctccctgcaaaaataaaagaaaaatagaagcattaagctgcttattttgtaaactgacataattgagaccatgttttcag
||| ||||||||  | | | |  |  | |  |||||||  ||||||||||| ||||| || || || || ||||||||||||||||||||||||||||||||||   ||| |        | |  |||   |  |    |   | ||| |   |     |                                                            
GGGAGCTGCTGGCCTGGAACTCACGATCGCTAGTGAGGTTTTTGAAGAGTCCGGTCGGTCCCTCGTTCGGGGAACTTTGGATTATCTGCAAGGTCTCAAGgtgcctcgtgcttttcgattttctttcccgattgtttttttcacttgctacgctctgtcag-----------------------------------------------------------

upper sequence: GLYMA02G16860.2 (Glycine max), 5'ss of exon 5
lower sequence: EFJ13632 (Selaginella moellendorffii), 5'ss of exon 5
GGGTGCTGCTGGTTTTGCATTACCTGTTGGAAGTGAGGCATTTGAAGAGTCGGGTCGCTCACTTGTACGTGGAACTTTGGATTATCTGCAAGGTCTCAAGgtgcgagtgttcgcatccatccaatccttctgctcccctctccctgcaaaaataaaagaaaaatagaagcattaagctgcttattttgtaaactgacataattgagaccatgttttcag
||| ||||||||  | | | |  |  | |  |||||||  ||||||||||| ||||| || || || || ||||| ||||||||||||||||||||||||||||      |||      | | ||  || | |       |   | ||      |         ||                                                     
GGGAGCTGCTGGCCTGGAACTCACGATCGCTAGTGAGGTTTTTGAAGAGTCCGGTCGGTCCCTCGTTCGGGGAACCTTGGATTATCTGCAAGGTCTCAAGgtgc-----ctcgtgctt-ttcgatttttttcccgattgtttttttcacttgctacgctctgtcag-----------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298166383|gb|HO010962.1|HO010962
EST:     CGGGTCGCTCACTTGTACGTGGAACTTTGGATTATCTGCAAGGTCTCAAG                         ATGCTTGGAGTCAAGAGAATTGAACGGGTACTTCCAGTTGGAACTTCCTTG
genomic: CGGGTCGCTCACTTGTACGTGGAACTTTGGATTATCTGCAAGGTCTCAAGgtgcgagtgt ... atgttttcagATGCTTGGAGTCAAGAGAATTGAACGGGTACTTCCAGTTGGAACTTCCTTG
EST: gi|298179338|gb|HO027809.1|HO027809
EST:     CGGGTCGCTCACTTGTACGTGGAACTTTGGATTATCTGCAAGGTCTCAAG                         ATGCTTGGAGTCAAGAGAATTGAACGGGTACTTCCAGTTGGAACTTCCTTG
genomic: CGGGTCGCTCACTTGTACGTGGAACTTTGGATTATCTGCAAGGTCTCAAGgtgcgagtgt ... atgttttcagATGCTTGGAGTCAAGAGAATTGAACGGGTACTTCCAGTTGGAACTTCCTTG